Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40140 363 / 4e-119 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G65200 306 / 4e-97 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT3G47820 271 / 4e-84 PUB39 PLANT U-BOX 39 (.1) AT5G62560 202 / 1e-57 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G67340 130 / 1e-31 ARM repeat superfamily protein (.1) AT2G23140 99 / 2e-21 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 94 / 7e-20 PUB11 ARM repeat superfamily protein (.1) AT1G71020 92 / 2e-19 ARM repeat superfamily protein (.1.2) AT3G54790 89 / 2e-18 ARM repeat superfamily protein (.1.2) AT2G28830 87 / 9e-18 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039447 [exp] 795 / 0 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10034119 [exp] 320 / 4e-102 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10043464 [exp] 318 / 3e-101 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10011514 [exp] 99 / 2e-21 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 99 / 3e-21 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 96 / 2e-20 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 94 / 9e-20 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016016 [exp] 91 / 8e-19 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 90 / 1e-18 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076400 [exp] 343 / 6e-111 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.015G071200 [exp] 334 / 1e-107 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 267 / 8e-84 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.007G051000 [exp] 100 / 1e-21 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 98 / 4e-21 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 97 / 6e-21 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 94 / 1e-19 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.009G165900 [exp] 88 / 5e-18 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.002G248600 [exp] 87 / 5e-18 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G009900 [exp] 87 / 8e-18 AT5G42340 763 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10039470 pacid=23175582 polypeptide=Lus10039470 locus=Lus10039470.g ID=Lus10039470.BGIv1.0 annot-version=v1.0 ATGGGGTTCCGCCAAGCTCTGCAAAGGCTTGAGGTTCACCAGCCGGTGGACAATAAAATTCGCCAGTCCATGATCGACGAACAAAAAGAGAACCTCAACT ATAAGCAACACAAGCAACGATGGAGCATCTTCTCCTCCCGGAGATCCCTCTCTTGGGCCGCTGCATCCTCCCACTCAAAGACAACGCCACGCAACCAAAC CACCACCACCGCCGATAACGACGACGACGATGACGGCGGATTCATACCGACAGAATTCCTCTGTCCCATATCCGGGTGTCTAATGGGCGACCCTGCCATC GTCTCCTCCGGCCATACGTTCGATCGAGCCTGCCTCCAAGCCTGCTACTCTCTCGGATTCTCACCTTCCTTCCCGGATGGCTCAGTCCCTGATTTCTCCG CCGTAATCCCTAACCTAGCCCTCAGATCCACCATTCTCAAATGGTGTAAGCAGCACTCCCTCAGCCCTCCTAAATCACTCAATTACTCCGCCGCCGAGAA CATCGTCAGGGCCAAGATGGCGCGACAGAAACAGAGGAAATCAGAATCGGAGAACAGAGCAATTGGGGAAATTGATCCGATGGTTGGTAATATTCCGGAG ATTCTCGTCTCTTCAAGTTCGGGAGAATCAGTGAGTTCAACCGGGTCGTCTGGCTTGTCGTTCCCAATTCAATTTGTGACCCGACCCAGATGTTACGCAT CCGGTTCTACGTCCTCCTCGGAGACCGACGAATTCCTAATAAACCCGGAAGAGGAAGAGGAGCTGGTGGCCAAGCTGAACAGCGCCCAAGTGCCGGAGGT TGAAGAAGCCGTGATTTCGCTCAGGAAATTGACGAGAACGAAAGATGAGCATAACTCATGCTGCATCCAGCTCTGTACGCCACAGCTGCTCTCGGCCTTG CGGTCTCTAATCGCTTCCAGGTACACCAACGTCCAGGTCAACTCGGTGGCTTGTGTGGTTAACCTCTCGTTGCATAAAAAGAACAAGGTCAAGATCGTAC GGTCGGGAATCCTCCCGCCTTTGATTGAAGTATTGAAAGGAGGTTTCGCCGAGGCGCAGGAGCACGCTGCTGGCGCAATTTTTAGCTTGGCACTGGACGA ACAGAACAGGACGGCAATCGGAGTTTTAGGGGCTCTTCCGCCGCTTCTGAATCTGCTGCGGTCGGGAAGCGAGCGGACTAGGGATGACTCGGCGTCGGCT TTGTACCACTTGTCGCTGATTCATAGCAATCGGAGCAAGATGGTGAGAATCGGGTCGGTGGGGGTGCTGTTAGGGGTTTTGAAGTCGGGTCATATGCCGG GTCGGGTACTGTCGATATTAGGCAACTTGGCGTTTTGCAACGATGGGCGTACAGCGATGTTGGATGGTGGCGGGGTGGAGAGTTTGGTGAGGAGGTTGAG GATTGAGATGGAATCGGAATCGGGTTTGGAGGAGACGTGTGTGAGTGTATTGTACGGGCTGAGTCAGGGCGGGTTGAGGTTTAAAGGGTTGGCGAAGGCG GCGGGAGGGGAGGAGGTAGTGGCCGGAGCGGCGGAGAGGTGTCGGGGGGAAGAGACGAGAGAGAAGGCAAAGATGGTTTTGGAGATGATACAGCGTAAGG CGGAGGAAGACGTGACGGAAGAAGTTGATTGGGAGGAGGTTCTGGAGGTGGAAACTCGGTCGGAGTTCAGTTGTAAAACTCGGTATACAGTCGTCGGTAA TCGGAGGGATGAGGCTACATCTACTTGCAACTCGTTCTAG
AA sequence Show only first row Show all	>Lus10039470 pacid=23175582 polypeptide=Lus10039470 locus=Lus10039470.g ID=Lus10039470.BGIv1.0 annot-version=v1.0 MGFRQALQRLEVHQPVDNKIRQSMIDEQKENLNYKQHKQRWSIFSSRRSLSWAAASSHSKTTPRNQTTTTADNDDDDDGGFIPTEFLCPISGCLMGDPAI VSSGHTFDRACLQACYSLGFSPSFPDGSVPDFSAVIPNLALRSTILKWCKQHSLSPPKSLNYSAAENIVRAKMARQKQRKSESENRAIGEIDPMVGNIPE ILVSSSSGESVSSTGSSGLSFPIQFVTRPRCYASGSTSSSETDEFLINPEEEEELVAKLNSAQVPEVEEAVISLRKLTRTKDEHNSCCIQLCTPQLLSAL RSLIASRYTNVQVNSVACVVNLSLHKKNKVKIVRSGILPPLIEVLKGGFAEAQEHAAGAIFSLALDEQNRTAIGVLGALPPLLNLLRSGSERTRDDSASA LYHLSLIHSNRSKMVRIGSVGVLLGVLKSGHMPGRVLSILGNLAFCNDGRTAMLDGGGVESLVRRLRIEMESESGLEETCVSVLYGLSQGGLRFKGLAKA AGGEEVVAGAAERCRGEETREKAKMVLEMIQRKAEEDVTEEVDWEEVLEVETRSEFSCKTRYTVVGNRRDEATSTCNSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	0	1
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	2.4	0.8708
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	3.5	0.8381
AT4G14380			unknown protein		Lus10011818 [exp]	3.9	0.8346
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	13.9	0.7529
AT3G07470			Protein of unknown function, D...		Lus10019216 [exp]	14.0	0.7839
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	15.5	0.8212
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	15.9	0.7918
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	16.7	0.7713
AT3G17120			unknown protein		Lus10017073 [exp]	18.8	0.8079
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	20.2	0.7763

Compare expression of checked genes

Lus10039470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.