Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40150 278 / 1e-94 Peroxidase superfamily protein (.1) AT3G28200 255 / 7e-86 Peroxidase superfamily protein (.1) AT5G47000 209 / 2e-67 Peroxidase superfamily protein (.1) AT4G17690 196 / 1e-62 Peroxidase superfamily protein (.1) AT1G24110 194 / 2e-61 Peroxidase superfamily protein (.1) AT4G37520 145 / 8e-43 Peroxidase superfamily protein (.1.2) AT2G18980 142 / 1e-41 Peroxidase superfamily protein (.1) AT4G37530 141 / 3e-41 Peroxidase superfamily protein (.1.2) AT5G14130 140 / 6e-41 Peroxidase superfamily protein (.1) AT2G34060 139 / 2e-40 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039445 [exp] 351 / 1e-123 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10014517 [exp] 313 / 2e-110 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10032170 [exp] 311 / 9e-110 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10029201 [exp] 227 / 6e-76 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10010716 [exp] 228 / 5e-75 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10004234 [exp] 211 / 5e-68 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 209 / 2e-67 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10013955 [exp] 152 / 2e-44 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10032035 [exp] 148 / 1e-43 AT5G67400 394 / 3e-138 root hair specific 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351000 [exp] 268 / 1e-90 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 228 / 4e-75 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 228 / 9e-75 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 179 / 1e-55 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 151 / 1e-44 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 149 / 3e-44 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.007G053400 [exp] 147 / 2e-43 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G329200 [exp] 146 / 5e-43 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.018G089900 [exp] 139 / 3e-40 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.008G103200 [exp] 135 / 9e-39 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10039471 pacid=23175647 polypeptide=Lus10039471 locus=Lus10039471.g ID=Lus10039471.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGCCCTTACTACAACGTCCTACTCGGCCGCCTCGACTACCGCATCTCCAAGTCTTCCTTCATCCCCGGAAACCTCCCTTTGCCGTCGATGT CCACCTCGCAAATGATCGGAATGTTCGCTGCCAGGGGATTCTCTGTCCAGGAGATGGTGGCGCTTAGCGGGGCTCACACCATTGGGTTTTCTCACTGTAA AGAGTTCAGCGGGCTGCTCTACAACGGTAGCTCAAGCGGATACAATCCGAGATTTGCGCAGGCGCTTCGGAAGGCGTGCACCAATTCAAGGAAGGACCCG TCGGTTTCGGTGTTCAACGACATAATGACACCCAACAAATTCGACAATGTGTACTACCAGAACTTGCCCAAGGGGCTGGGTTTGCTGGCGTCGGACCACG CCCTGGTCAAAGACGACAGGACACGGCCCTTTGTGGAGATGTACGCCAGGGATCAGAACAAGTTCTTCCATGATTTCGCCAATGCGATGCAGAAGCTGAG CGTTTATGGGATCAAGACTGGGAGGAGAGGCGAAATTAGGCACAGGTGTGATGCTATCAACTGA
AA sequence Show only first row Show all	>Lus10039471 pacid=23175647 polypeptide=Lus10039471 locus=Lus10039471.g ID=Lus10039471.BGIv1.0 annot-version=v1.0 MVGGPYYNVLLGRLDYRISKSSFIPGNLPLPSMSTSQMIGMFAARGFSVQEMVALSGAHTIGFSHCKEFSGLLYNGSSSGYNPRFAQALRKACTNSRKDP SVSVFNDIMTPNKFDNVYYQNLPKGLGLLASDHALVKDDRTRPFVEMYARDQNKFFHDFANAMQKLSVYGIKTGRRGEIRHRCDAIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	1.0	0.9181
					Lus10042355 [exp]	2.8	0.8963
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	3.0	0.8533
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	3.5	0.8645
					Lus10026314 [exp]	3.5	0.8804
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	4.7	0.8292
AT1G68330			unknown protein		Lus10034341 [exp]	6.7	0.8386
					Lus10024338 [exp]	7.3	0.8359
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	8.1	0.8433
AT4G35320			unknown protein		Lus10022985 [exp]	8.4	0.8408

Compare expression of checked genes

Lus10039471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.