Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 222 / 2e-66 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 140 / 5e-36 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 63 / 3e-10 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 61 / 8e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 49 / 6e-06 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039444 [exp] 855 / 0 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10009502 [exp] 565 / 0 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 452 / 1e-154 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 432 / 6e-147 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 419 / 2e-142 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10004841 [exp] 161 / 6e-48 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10029534 [exp] 123 / 6e-30 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10039617 [exp] 122 / 1e-29 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 79 / 1e-15 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290600 [exp] 431 / 1e-146 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 401 / 1e-134 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 399 / 4e-134 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 387 / 3e-129 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.007G100600 [exp] 122 / 1e-29 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 113 / 1e-26 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 67 / 1e-11 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G074700 [exp] 64 / 1e-10 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G249400 [exp] 54 / 2e-07 AT3G07400 1235 / 0.0 lipase class 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10039472 pacid=23175527 polypeptide=Lus10039472 locus=Lus10039472.g ID=Lus10039472.BGIv1.0 annot-version=v1.0 ATGAACCAGCAACCTCCCATATTCAACAATGGGTTGGAATTGGCTACTTCTGTGGTCGACTCAGCACTGCTGGACCTATCTTGGAATTCCATCTGGAGCC TTTATGCACAAGTCAATAATAATGTCCAACCTCTCCACCAATCTTCCCCTCTCTCTGCTACTTTCAAAATCTTTAAGCAACCAAACTTAACAGTCATAGC TTTTGTCACTTTACCCATTTATTCCCCTCAACATCTCCAATCAGATTTGGTTTCATCGGCAACTCTCAAGCAGCAGAACTTTCCACACCTCGATTTCTTG TGTTCAACAAGAAACCCTTCTTTCTCCATTCACTCATCTGCAGTTTTTGGTTTTCGTTTTCTCTTCAACGCTCTCCATGCTTTCCCACATCAGTTTCTCG TTCGAAGAGACGGTGAAATAGTTCTTGAATCCCCGTTAATAGTGACTGGGCATTCACTAGGAGGGTCAATAGCTTCTCTGTTCACACTATGGCTGCTGGA CTGTTTGAGCCAGCTTCCATCCGAGAAGCCATCAAAGAAGCTACCACTCTGCATAACATTTGGGTCACCTCTGATTGGAGACTCTGGCCTCCACCGTGGC ATCTCACAGCGCTCCACTTGGAACTCTTGCTTCCTACATGTTGTTTCCGGCCAAGACCTTCTCCCTAAGCTCTTATTAGCTTCATCATCAGTTACCAGTC CTCAGCAGCAGCAGCAGTACACACCTTTCGGCATCTTTATGCTGTGTTCTGAGCTGGGTCATGCCTGCGTTGAAGACTCACAAGTGGTTTCACTCTTGTT CTGCAACGCAATGGAATTGGCAACTACTACCCATTTGGTTTCTAATGATGGATTGCCTGTTGAACATTATGGGTCGTTGTTGCAACATATAAAGACCAGA GCTTTGTGTCGGGGGAGTTCCCAACTTGGTCTCCCCATTGAAGATTCACTCCAGGCTGGGATTGTCTTACTGCTTCGAGCTATTGGGATTACTCAGTACC AGCAGCAGAATCCTAAGATGATGGAGCTGGGGGAACAACTGGAAAGCAAAGAGAGACGGTCAATGTTGAGGAGGAGTGCGATGGATCCAAGCAGGAAACT TCACGACATAAAAATAAGAATGGCATTCCTGGAATGGTACAAAAAGGACTGCAAGAAGAAAGGAATCGGATACTACGATAGCTACAAGAACCATAGAGGT ACTGCTGACATGGTCATAGCCAAGCACAAGAAATACCTAACCAACTACTGGAAAGAGTTGGTGGAAGAAGCTGAGAAGAAGCCTCAAAAGGAAGGATCAT ACATCTCGATGATGTGGCTCTACGCAGGAACCACTTACCGAAGGATGATCGAGCCACTGGACATTGCCGCGTTCTATAAAGAGAATGATAAGTAA
AA sequence Show only first row Show all	>Lus10039472 pacid=23175527 polypeptide=Lus10039472 locus=Lus10039472.g ID=Lus10039472.BGIv1.0 annot-version=v1.0 MNQQPPIFNNGLELATSVVDSALLDLSWNSIWSLYAQVNNNVQPLHQSSPLSATFKIFKQPNLTVIAFVTLPIYSPQHLQSDLVSSATLKQQNFPHLDFL CSTRNPSFSIHSSAVFGFRFLFNALHAFPHQFLVRRDGEIVLESPLIVTGHSLGGSIASLFTLWLLDCLSQLPSEKPSKKLPLCITFGSPLIGDSGLHRG ISQRSTWNSCFLHVVSGQDLLPKLLLASSSVTSPQQQQQYTPFGIFMLCSELGHACVEDSQVVSLLFCNAMELATTTHLVSNDGLPVEHYGSLLQHIKTR ALCRGSSQLGLPIEDSLQAGIVLLLRAIGITQYQQQNPKMMELGEQLESKERRSMLRRSAMDPSRKLHDIKIRMAFLEWYKKDCKKKGIGYYDSYKNHRG TADMVIAKHKKYLTNYWKELVEEAEKKPQKEGSYISMMWLYAGTTYRRMIEPLDIAAFYKENDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	0	1
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	1.4	0.8507
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	2.0	0.8080
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	4.2	0.8001
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	4.7	0.8156
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022543 [exp]	5.5	0.7893
AT1G27290			unknown protein		Lus10037037 [exp]	6.0	0.7908
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	8.1	0.7908
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	8.8	0.7935
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	9.5	0.8047
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	9.5	0.8085

Compare expression of checked genes

Lus10039472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.