Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01380 1416 / 0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) AT2G22530 74 / 4e-13 Alkaline-phosphatase-like family protein (.1) AT5G17250 45 / 0.0004 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039444 [exp] 1649 / 0 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10025722 [exp] 54 / 7e-07 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10005793 [exp] 45 / 0.0003 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350700 [exp] 1476 / 0 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Potri.007G010600 [exp] 66 / 1e-10 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF00884 [flax] [poplar] Sulfatase Sulfatase CL0088 [flax] [poplar] PF04987 [flax] [poplar] PigN Phosphatidylinositolglycan class N (PIG-N)
Representative CDS sequence Show only first row Show all	>Lus10039473 pacid=23175597 polypeptide=Lus10039473 locus=Lus10039473.g ID=Lus10039473.BGIv1.0 annot-version=v1.0 ATGAGAAGCGGCGACGGGATCTTGGGTGGAAAAGGCGGAGATGGTAGAGTGTCCACCGATGTAGTGAGAAGGAGAAGGAAATGGCTGAAGAGACGGGAGA CATGGCTTGTTATACTTGGAGTTATACTCCACGCTGTGTATATGCTCAGCATCTTCGACATTTACTTCAAGACCCCGATTGTCCACGGCATGGATCCCGT TCACCCTCGCTTCACTGCTCCCGCTAAGCGCCTCGTTCTTCTAGTCGCTGATGGACTACGTGCTGATAAGTTCTATGAGCCGGACTTGGAGGGAAACTAC AGAGCTCCGTTTTTGAGGAATATAATTAGAAACCAAGGTAGATGGGGAGTCTCTCATGCTCGGCCACCTACTGAATCAAGGCCAGGCCATGTGGCCATAA TTGCTGGGTTTTACGAGGATCCAAGTGCTGTCACAAAAGGATGGAAAGCTAACCCGGTGGAGTTTGATTCAGTTTTTAACCAAAGTAGACATACCTTTTC TTATGGTAGCCCAGATATTGTTCCAATATTCTGTAGTGCCTTACCACATAGTACGTGGAAGAGCTATCCTCACGAGTTTGAAGATTTTGCAACCGATGCT TCCTTTTTGGATGAGTGGTCTTTTGATCAATTTCAGAGCCTTCTGAATAGGTCACATGGAGACCCAAAGTTAAAGGAGTTACTTCACCAGGATAAATTAG TCATATTTCTGCATCTGCTGGGATGTGATTCAAATGGACATGCCCATAGGCCCTTTTCATCTATTTATCTCAATAATGTCAAGGTTGTGGACCACATTGC TGAACGAATGTATGCTCTTCTTGAAGACTACTACAAGGACAATCGTACAGCTTACATATTTACAGCCGACCATGGAATGAGTGATAAAGGTAGCCATGGT GATGGGCATCCTACGAACACTGATACTCCCCTTGTTGCTTGGGGAGCTGGAATCAAGTATCCAAGTATGACATCTGAGACCATCTATTCGGATCATGCTG TACGCTTTGTTGACGAGCATGAACATGGCACACCAACTCCGGTAGACTGGGGCCTAAGTGGCATAGAGCGAGTTGACGTTAATCAAGCTGATATTGCACC TCTTATGTCAACACTTGTTGGATTACCTTGTCCTGTTAACTCGGTTGGAAACTTGCCCCTAGGCTACATAAGCATGCTTAAGGAAGAAGAAGCTGAAGCT GTGGTAGCAAATACAAAACAGATATTAAATCAATTTCTCCGTAAATCTGAGATGAAGCATGCAAGCTCTTTGTACTTCAAGCCTTTTGTACCTCTGGCTA ATCACACAGCTTGGCTCGAGCAAATCGAGTCTCTAATATCTATTAAGGACTATGGAGGTGCAGTGAAGCTATCTGAAGATCTAAGAAGCTTGGCACTTCA GGGACTTCATTATTTTCAAACATATGATTGGCTAATGCTAATGACTATAATCACTCTTGGGTACATCGGTTGGATGCTGTATCTTGTTATTCATGTGCTG CAATCATATGCTTCGCTGGCAAGAGACATCATGAAGATGAAGCTAGCTGTATCACGGGAAGATAATTCTGGAAAGGTTTATCTGCTTGGAATTCTGGTGA TGGCAACAATTTCCATTCTCTTGATTGTGGAGCATTCTCCTCCCCTTTACCATGCATATATTGCAATGACCGTGTTTCTCTGGACCAATATACTTGGTGA ATATCGGTTCATCAGATCATTATGGAGATACTTAAGTGAGAGAAAGGCCAAGTATCTAAGTATATTTCTGACTGTTTGTTCTGTGTCAATAATCATCCTT GAACTCTTGGTGCACAGCTTCACAGACAGAAAGCTCTATACTTGGTGTTTCATAACTGTGGGAATCGCAGCTCCTGTTTATTTATTGAACAAAATTCCTT GGAGTTTGTGCATATCTATTTTTGTTTGTGCCACGTGTTGGTGTTTGTCCATTTTCACGTTGATGCCCGCAGAAATTCCTGATCATACTAATCTAGTGAT TGCAAGCGGAGTTCTAATAGTTGTGATTGCAGCTGCTGCAAGGTGGCTGGATTTTAACTCCGAAGGAAATAAGTACTGGATGAATATATGTTACCATGGG AAAGAGAAACGGAACTCCCCCATTTTATTCTACGTACAGGCTCTTTTGGTCGGATTATCATCAATCATGGTGCCATTGTCAACATCACACAGAACAGAGA AACAAGAACTTCACACATGGCATCAACTGATAAATTGGTTCATTGCAGGTCTCTCCATGATTCTTCCACTATTCTCAGACAATGGTCTTTTGTCTCGACT CACATCTATTTTTCTAGGCTTTGCACCTACATTCCTCCTCCTCTCCATTGGATATGAAGCTCTCTTCTACGGTGCACTTTCCCTTGTACTTATAGCATGG ATAATTTTTGAGAACAGCCTGCTTCAGTTAACTAGGGCTGAGAAAACGTCATCTTCTGCGATAAACATGAATGCCAATACGATACTTGAAAATGGAGACA GATTCTTGCAGCTTTCGGACATGAGGATCCCTTTAACTTTTATGGTTTTGTTCAATGTTGCCTTCTTTGGGACGGGGAATTTCGCGAGTATTGCAAGTTT TGAAATTTCATCTGTGTACCGGTTCATCACAGTGTTCAGCCCCTTTACTATGACAGCCTTACTCATCTTCAAGTTATTTATTCCATTCATGCTAGTCATA TGTGCTTTCAGTGCGATCACGAAACTACAAAGAGTGCCAAGACTAGGGTGCTATTTTCTTGTCATTTTGTGCTCGGACGTTATGACTATCCACTTCTTCT TCCTGGTCCGAAACACAGGAAGTTGGATGGAGATTGGTAACAGCATCAGCCATTTTGGAATAATGAGCGCCCAAGTTGTGTTCGTGCTTTTACTGTTTGC CCTCACAAATGTCTACACAAAAGGCATCCAGGTCAGAACAGGCCGCCCCTCGTCCCACAAACAAGTGTAG
AA sequence Show only first row Show all	>Lus10039473 pacid=23175597 polypeptide=Lus10039473 locus=Lus10039473.g ID=Lus10039473.BGIv1.0 annot-version=v1.0 MRSGDGILGGKGGDGRVSTDVVRRRRKWLKRRETWLVILGVILHAVYMLSIFDIYFKTPIVHGMDPVHPRFTAPAKRLVLLVADGLRADKFYEPDLEGNY RAPFLRNIIRNQGRWGVSHARPPTESRPGHVAIIAGFYEDPSAVTKGWKANPVEFDSVFNQSRHTFSYGSPDIVPIFCSALPHSTWKSYPHEFEDFATDA SFLDEWSFDQFQSLLNRSHGDPKLKELLHQDKLVIFLHLLGCDSNGHAHRPFSSIYLNNVKVVDHIAERMYALLEDYYKDNRTAYIFTADHGMSDKGSHG DGHPTNTDTPLVAWGAGIKYPSMTSETIYSDHAVRFVDEHEHGTPTPVDWGLSGIERVDVNQADIAPLMSTLVGLPCPVNSVGNLPLGYISMLKEEEAEA VVANTKQILNQFLRKSEMKHASSLYFKPFVPLANHTAWLEQIESLISIKDYGGAVKLSEDLRSLALQGLHYFQTYDWLMLMTIITLGYIGWMLYLVIHVL QSYASLARDIMKMKLAVSREDNSGKVYLLGILVMATISILLIVEHSPPLYHAYIAMTVFLWTNILGEYRFIRSLWRYLSERKAKYLSIFLTVCSVSIIIL ELLVHSFTDRKLYTWCFITVGIAAPVYLLNKIPWSLCISIFVCATCWCLSIFTLMPAEIPDHTNLVIASGVLIVVIAAAARWLDFNSEGNKYWMNICYHG KEKRNSPILFYVQALLVGLSSIMVPLSTSHRTEKQELHTWHQLINWFIAGLSMILPLFSDNGLLSRLTSIFLGFAPTFLLLSIGYEALFYGALSLVLIAW IIFENSLLQLTRAEKTSSSAINMNANTILENGDRFLQLSDMRIPLTFMVLFNVAFFGTGNFASIASFEISSVYRFITVFSPFTMTALLIFKLFIPFMLVI CAFSAITKLQRVPRLGCYFLVILCSDVMTIHFFFLVRNTGSWMEIGNSISHFGIMSAQVVFVLLLFALTNVYTKGIQVRTGRPSSHKQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	0	1
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	4.5	0.8743
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	5.7	0.8684
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	6.5	0.8554
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	9.6	0.8839
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	11.5	0.8317
AT2G46200			unknown protein		Lus10000549 [exp]	14.5	0.8558
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	17.5	0.8360
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	19.4	0.8544
AT3G27930			unknown protein		Lus10008782 [exp]	21.6	0.8119
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	22.0	0.7864

Compare expression of checked genes

Lus10039473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.