Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039441 [exp] 644 / 0 ND / Lus10039442 [exp] 186 / 2e-55 ND / Lus10004308 [exp] 112 / 4e-28 ND / Lus10010697 [exp] 103 / 2e-26 ND / Lus10029181 [exp] 103 / 6e-24 ND 39 / 0.008 Lus10042237 [exp] 97 / 7e-22 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10004305 [exp] 96 / 3e-21 ND / Lus10029831 [exp] 93 / 3e-21 ND / Lus10003449 [exp] 94 / 6e-21 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039474 pacid=23175689 polypeptide=Lus10039474 locus=Lus10039474.g ID=Lus10039474.BGIv1.0 annot-version=v1.0 ATGGCACCCTTCGAGTTCATTTCCGATACCGCTTTCGTCGCTTCAGCCGACAAAACCACAATCCAAGTATACGAGCTGACGGAGTCAGCGCACTCACCCT CCGCCGTCCGAACCACCGATTGGAAGAGCCTCGGAACCATCGGCTGCGACAACCACCAGCAGTACGACTCCCTGAAATTGTTCGACGAGGATATCCGAGG GCGAGATCTAAAGAATCTGGCCGAAGACCTCGCCCAGTCCCATTTATTCGTCAATCCTCACGGCAATTGCTTCTTAGACGTATCCGCCGGAGAATTCGTG GATCCGGCGTTCGGTGTCCAGTACTTGAGACTGAACGACACCTTCAATTGGTCTCAATACGGCGTCGTCAAACACCCGCCGCTGCCCCCCACATGGAGCA GCCGACACGCGCTGCCCTACCGCGGCGAGGCTCCCGAAGATGAAGTGAACGAAGCGATCGTCGATTACGGGAAGGAATTGAAGGGAAAGGAGGTGAAATT AGGGGAACTCAGCAGCCGATTGGCATCGAAGAAGGCCGAATTGGAATCCGCGAGGAAAGATGTGGAGAAATACCGCAAGTGGTGTTCTGATTTCAAGTAC AGGTACCGGGACACGATATCGACGTCGGAGGCGCCGGTGAAGATCCAGAGGAGGCGCGTGAAGGTGCCTAAGTCGACTTTCCGGATCTCGTCCCCGCCGA TCGTGCCGAACAGCCCGGTGGGGTGTCGGGTGCCGTCGTTTAAGGAGGAGACGATCGACGCGTTTTGGTTGTTGGACGAGGAGTGTGGAGGGTTCCCTCT GCCGCCGGCGGTGCAGGTGTGGAGTTCGGATGGGAAGTTCGACGGGGAGAATTGGTGGTGTATAAAGGCGAACAGGAGAGTGCAAGGAGGGGAAACGACG ATGCTGGTGTATTACGAAGGGGAATTCGATTACGCGGAGTTTGATAATCCGATGACGTCGAGGAGAGAGAGGGTTCCGGTGCCGTATAAGGTGAAGAATG GGGAGTTCGCGGCGGACAGGAATTTCAGCCTGGGTTATTTCTCCTTTACTTGGGAAGTCAGGGTTGTCTTCACTTACCGCTGGTAG
AA sequence Show only first row Show all	>Lus10039474 pacid=23175689 polypeptide=Lus10039474 locus=Lus10039474.g ID=Lus10039474.BGIv1.0 annot-version=v1.0 MAPFEFISDTAFVASADKTTIQVYELTESAHSPSAVRTTDWKSLGTIGCDNHQQYDSLKLFDEDIRGRDLKNLAEDLAQSHLFVNPHGNCFLDVSAGEFV DPAFGVQYLRLNDTFNWSQYGVVKHPPLPPTWSSRHALPYRGEAPEDEVNEAIVDYGKELKGKEVKLGELSSRLASKKAELESARKDVEKYRKWCSDFKY RYRDTISTSEAPVKIQRRRVKVPKSTFRISSPPIVPNSPVGCRVPSFKEETIDAFWLLDEECGGFPLPPAVQVWSSDGKFDGENWWCIKANRRVQGGETT MLVYYEGEFDYAEFDNPMTSRRERVPVPYKVKNGEFAADRNFSLGYFSFTWEVRVVFTYRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039474 [exp]	0	1
					Lus10006091 [exp]	2.2	0.9520
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	4.2	0.9453
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	4.5	0.9417
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	4.9	0.9272
AT3G03280			unknown protein		Lus10007960 [exp]	5.2	0.9445
					Lus10025243 [exp]	6.0	0.9358
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	7.0	0.9272
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	7.7	0.9438
AT2G42760			unknown protein		Lus10029248 [exp]	9.5	0.9184
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	12.0	0.9062

Compare expression of checked genes

Lus10039474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.