Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28180 943 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT2G24630 845 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT4G31590 843 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT4G07960 749 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT3G07330 736 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT5G22740 390 / 2e-128 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 386 / 7e-127 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 385 / 4e-126 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT1G24070 384 / 1e-125 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT4G13410 382 / 2e-125 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039440 [exp] 1236 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10026923 [exp] 847 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 801 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10007715 [exp] 766 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 757 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 747 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 665 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 392 / 2e-129 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 383 / 2e-125 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009300 [exp] 880 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 877 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.005G146900 [exp] 798 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G114200 [exp] 792 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 761 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 739 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 404 / 8e-134 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G190701 [exp] 385 / 1e-130 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.010G234100 [exp] 390 / 1e-128 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.009G149700 [exp] 386 / 9e-127 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10039475 pacid=23175622 polypeptide=Lus10039475 locus=Lus10039475.g ID=Lus10039475.BGIv1.0 annot-version=v1.0 ATGGCTCCAAGCTCGGTGGTTGTGACGATTGAGAAGCCAAACAACTTGTCAGTAGTACAAATCAACGCCGCCGCCTCACCAGATTCGCCCTTCCTCCCCG CCGACAAACAGAAAGCCGCCAGTCCCAAGCAATTCACATGGTTCATCCTCCTCAAGCTCTACAGAGCCTTAACTTGCATTTCATGGCTGGCTGTAGGGTT CAAGGCGGTTTTCAGATCGGTCAAGAAAAGGGTAGCTCAATCTGACTCCGGGGAGGAAGTTGAAGAAGCAGACATGGAGCCCAGAAGCAGAGGGAAGCTC TACAAGTTCATCAAGGCGTTTCTCTTCCTCACCATCGTAGCATTCGCGGTGGAAGTGGTCGCGCACTTGAAGAACTGGAATTTGAATCTGGTCCAGCCAT GGGAGGTTCAAGGTCTGGTCCAATGGTCTTACATGGCTTGGCTATCTTTCAGGGTCGATTACATTGCTCCTACTGTCAAGACGCTTTCCCAGTTCTGCAT CGTACTGTTCCTCATTCAGTCACTTGATCGCCTCGTGCTTTGCATCGGATGCTTCTGGATCAAGCTCAAGAAAATGAAGCCTCGAATTGATGCAGAGGCT TATGATGTTGAGGACCCTCACAGTTTCCCCATGGTTCTTGTTCAGATTCCAATGTGCAATGAAAGAGAGGTTTTTGCTACATCGATTGGTGCAGCCTGCC AGCTAGACTGGCCGAGAGACAGAATCCTAATTCAAGTTCTTGATGATTCGGACGATGGCAATCTGCAGCTTATGATTAATGAGGAGGTCCACTCATGGCG TCAGAAAGGGATCAATATCATCTACAGGCATAGGTTGATCAGAACTGGTTATAAGGCCGGCAACCTTAAGTCGGCAATGGGATGTGACTATGTCAAAGAC TACGAATTTGTCGCCATACTTGATGCCGATTTCCAGCCCAACCCTGATTTCCTCAAACTCACTGTTCCCCACTTTAAGGGGAAGCCGGAGCTGGGATTGG TCCAAGCACGGTGGTCATTTGTGAACAAAGATGAGAACTTGCTAACTAGGCTGCAGAACGTGAATCTGTGCTTCCATTTCGAGGTGGAGCAACAGGTGAA TGGAATGTTCTTGGGATTCTTTGGGTTCAATGGGACAGCTGGTGTGTGGAGAATCAAGGCCCTAGAGGATTCAGGCGGCTGGTTGGAGAGAACAACTGTC GAAGACATGGACATTGCAGTAAGAGCTCACTTGAATGGATGGAAGTTCATCTTCCTCAACGATGTCAAGGTCCTTTGTGAATTGCCCGAATCCTATGGAG CTTACAAGAAACAGCAGCATCGCTGGCATTCTGGCCCTATGCAGCTCTTCCGCTTGTGCCTTCCTACCATATTAAAATCCAAGATCTCAATGTTGAAGAA AGCAAACTTGATCATGCTCTTCTTCCTACTAAGGAAGCTAATTCTACCATTCTACTCATTCACATTGTTCTGTATCATACTCCCACTAACCATGTTCATC CCAGAGGCAGAGCTCCCTCTCTGGGTGATCTGCTACATACCCATTATCATGTCATTCCTCAACATCCTCCCATCCCCAAAATCATTCCCATTCTTGGTCC CCTACCTGCTGTTCGAGAACACAATGTCTGTCACCAAGTTCAACGCCATGGTGTCAGGGCTATTCCAGCTGGGAAGTGCATACGAATGGGTGGTTACCAA GAAGACCGGAAGGTCATCCGAATCAGACTTGCTAGCACTAGCAGAGAGGGAAGAAGAGAAGGCAGCAACGACGACAATGCTGAGAAGGAATTCGGAGTCG GGTCTAGAATTGTTGAGCAAACTCAAGGAAGTAGAGGCAGAGGTGGCTGTGGCTATTCCAAAGAAGAAGAACAGGCTGTATAAGAAAGAGCTAGTGCTCG CTTCCTTGCTGCTCACTGCTGCAGCAAGGAGTCTGTTGTCAGCTCATGGTGTTCACTTCTACTACTTGCTGTTCCAAGGTTTGTCGTTTCTGGTTGTCGG GTTGGATTTGATTGGGGAGCAAGTAAGCTGA
AA sequence Show only first row Show all	>Lus10039475 pacid=23175622 polypeptide=Lus10039475 locus=Lus10039475.g ID=Lus10039475.BGIv1.0 annot-version=v1.0 MAPSSVVVTIEKPNNLSVVQINAAASPDSPFLPADKQKAASPKQFTWFILLKLYRALTCISWLAVGFKAVFRSVKKRVAQSDSGEEVEEADMEPRSRGKL YKFIKAFLFLTIVAFAVEVVAHLKNWNLNLVQPWEVQGLVQWSYMAWLSFRVDYIAPTVKTLSQFCIVLFLIQSLDRLVLCIGCFWIKLKKMKPRIDAEA YDVEDPHSFPMVLVQIPMCNEREVFATSIGAACQLDWPRDRILIQVLDDSDDGNLQLMINEEVHSWRQKGINIIYRHRLIRTGYKAGNLKSAMGCDYVKD YEFVAILDADFQPNPDFLKLTVPHFKGKPELGLVQARWSFVNKDENLLTRLQNVNLCFHFEVEQQVNGMFLGFFGFNGTAGVWRIKALEDSGGWLERTTV EDMDIAVRAHLNGWKFIFLNDVKVLCELPESYGAYKKQQHRWHSGPMQLFRLCLPTILKSKISMLKKANLIMLFFLLRKLILPFYSFTLFCIILPLTMFI PEAELPLWVICYIPIIMSFLNILPSPKSFPFLVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLALAEREEEKAATTTMLRRNSES GLELLSKLKEVEAEVAVAIPKKKNRLYKKELVLASLLLTAAARSLLSAHGVHFYYLLFQGLSFLVVGLDLIGEQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	1.0	0.9203
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	2.0	0.9002
AT5G42860			unknown protein		Lus10010231 [exp]	2.4	0.8783
AT5G38700			unknown protein		Lus10010019 [exp]	2.8	0.8394
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	3.9	0.8640
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	4.2	0.8292
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	5.3	0.8664
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	7.3	0.8549
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	8.8	0.7601
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	11.5	0.8247

Compare expression of checked genes

Lus10039475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.