Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28150 421 / 1e-145 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G15890 297 / 7e-96 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT5G15900 291 / 7e-95 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G23790 272 / 2e-87 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 271 / 7e-87 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 269 / 6e-86 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G11090 258 / 5e-82 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 257 / 8e-82 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G51640 219 / 2e-66 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 219 / 9e-66 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039438 [exp] 751 / 0 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10034087 [exp] 304 / 1e-99 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 303 / 2e-99 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 295 / 3e-97 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 295 / 3e-96 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10024167 [exp] 281 / 3e-91 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10032367 [exp] 256 / 1e-80 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 252 / 5e-79 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10029188 [exp] 247 / 2e-77 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073700 [exp] 521 / 0 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.011G144100 [exp] 454 / 3e-159 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105700 [exp] 309 / 2e-101 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.014G095800 [exp] 288 / 3e-93 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 287 / 4e-93 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105500 [exp] 286 / 6e-93 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 283 / 1e-91 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 271 / 2e-87 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.003G137800 [exp] 268 / 3e-85 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 267 / 4e-85 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10039476 pacid=23175465 polypeptide=Lus10039476 locus=Lus10039476.g ID=Lus10039476.BGIv1.0 annot-version=v1.0 ATGTCCAAGGTTCTGCCATTCTTGTTTTCTTCCTTTGCACTAACCACCATTTTCACCTTCTTCCTTCTACACTCCCCTTTGCCCTTTTATCTCACCACTT CTCCTCCTCCTCCTCCTACCAAACAAACACAACAGCATCAGAAAGATCAGCTTATTACTATTGATGATCATCAAACCGTCTTGTTAAAACCGCCACCGCC TCACAATCTTAAGGAGGAAGAGAAATGCGACCTGTTCAAGGGTCGGTGGGTGCCTGATCATGAAGGGGCGCGGTACAGTAATTTCAGCTGCAAGACGATT CCAGACTCGAAGAACTGTTTCAGACATGGCAGGAAAGACAAGGACTTCCTCAATTGGAGATGGAAGCCTGATCATTGTGTTCTCCACAAGTTTGATCCAA AAGCATTCTTCGACATTGTAAGAGGGAAGACAATGGCATTTGTTGGGGACTCTGTCGCCAGAAACCATTTTGAATCCCTTCTCTGCCTCCTCTCCCAGGA GGAAACCCCAGTAAATGGCTATAAGGACGATGATGACAGGGACATAATCTGGCATTTCCCCAAGCACCAATTCATTCTCAAGGTCATCTGGTCTAAATTC CTCATTGTCGGAGAAGAAAGATTGATCAACGGTACATCCACCGACATCCATGACTTGCACGTCGACAAGCTGGACGAAAACTGGGCTCGAGACTTGCATG CCTTAGACTATGTGATCATCTCAGATGTTCACTGGTTCTTCAGGTCAATCTACTTGCATCGGGATAACAAGATGGCGGGCTGCATCTACTGTAACGAACC AAACGTGACGAACTGGTATGTGAGCTCGGCCATCAAGATGGCGCTGAGACTGGCGCTCGAACGAATCAACAGCTGCGGGGAATGCAAGACCACAGTTACC GTGATGAGGACATTCTCCCCTTCGCATTTTGAGAACGGGGTGTGGAACAATGGAGGGAACTGCAACAGGACGAGTCCCATCCACGAGAAGGAATTGAATT CAGGGGAAGGGGATTATGAGTTGAGAGACAAGCAAATCGAGGAGCTGCAAAGGATCAAAGGAAAGGCCAAGAAAGGGAACAAGTATGGAGTGATGGATGT AACCATGGCGATGCGTATGAGGCCTGATGGACACCCTGGGGAGTTCTGGGGGAACATATGGATGAAAGGCTATAATGACTGTGTTCATTGGTGCTTGCCT GGAGCTATTGATGTCTGGAACGATTTCTTACTCGCAATCCTCAAACGACTCACCTGA
AA sequence Show only first row Show all	>Lus10039476 pacid=23175465 polypeptide=Lus10039476 locus=Lus10039476.g ID=Lus10039476.BGIv1.0 annot-version=v1.0 MSKVLPFLFSSFALTTIFTFFLLHSPLPFYLTTSPPPPPTKQTQQHQKDQLITIDDHQTVLLKPPPPHNLKEEEKCDLFKGRWVPDHEGARYSNFSCKTI PDSKNCFRHGRKDKDFLNWRWKPDHCVLHKFDPKAFFDIVRGKTMAFVGDSVARNHFESLLCLLSQEETPVNGYKDDDDRDIIWHFPKHQFILKVIWSKF LIVGEERLINGTSTDIHDLHVDKLDENWARDLHALDYVIISDVHWFFRSIYLHRDNKMAGCIYCNEPNVTNWYVSSAIKMALRLALERINSCGECKTTVT VMRTFSPSHFENGVWNNGGNCNRTSPIHEKELNSGEGDYELRDKQIEELQRIKGKAKKGNKYGVMDVTMAMRMRPDGHPGEFWGNIWMKGYNDCVHWCLP GAIDVWNDFLLAILKRLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Lus10039476 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	17.3	0.7241
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	37.5	0.6629
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	41.2	0.6794
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10026347 [exp]	86.2	0.6004
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	100.1	0.6433
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	119.3	0.6391
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	129.7	0.6297
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	131.5	0.6379
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	196.5	0.6097
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10041565 [exp]	208.0	0.5919

Compare expression of checked genes

Lus10039476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.