Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40190 266 / 3e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT3G28140 234 / 1e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039437 [exp] 370 / 3e-133 AT5G40190 265 / 8e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10014523 [exp] 337 / 6e-120 AT5G40190 255 / 1e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10032164 [exp] 335 / 4e-119 AT5G40190 254 / 3e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350300 [exp] 330 / 2e-117 AT5G40190 264 / 3e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G073800 [exp] 310 / 1e-109 AT5G40190 247 / 1e-84 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039477 pacid=23175674 polypeptide=Lus10039477 locus=Lus10039477.g ID=Lus10039477.BGIv1.0 annot-version=v1.0 ATGTCACAGGGATATGCAATTGAGCTGTATTTCGACCCAGCACTGGAGAACCAGGTCTTGAAGGCCTGGAACGTCCTAGCTCGCCGCCAAATCAGCACCC AACTCATCGAAATAGAGTCTCGTCCTCACATAACACTCTATTCTAACCCTTTCATCGACCCCGCCAAGCTGGAGTCTGTGATTAGGAGCTTCGCTTCCAA GCAGGAGCCTCTGCCTTTGTCTCTATCAACAATCGGCTCTCTCCCTAGTGATACCAACGTCCTCTTCCTAGCTCCAACGCCTTCCCTCTCGCTGCTTCAA TTCCATTCCCAGCTCTGCGATGCTATGAAGAAAGAAGGAATTGAGATTGGCGATGAGTATCGCCCTGACTCTTGGCTTCCTTACTGTGCCGTCGCTCAGG ACGTCCCAAAGGCTAGAATGGCCGATGCATTTTGCGTCCTCAGAGACTTGCGGTTGCCTGTTTCTGGGTATGCAATGGACATTGGAGTTGTCGAGTTCTC CCCCGTCCGTGAATTCTGCTCCTTTATGCTTGGTAATGCCCTAGAATGA
AA sequence Show only first row Show all	>Lus10039477 pacid=23175674 polypeptide=Lus10039477 locus=Lus10039477.g ID=Lus10039477.BGIv1.0 annot-version=v1.0 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSNPFIDPAKLESVIRSFASKQEPLPLSLSTIGSLPSDTNVLFLAPTPSLSLLQ FHSQLCDAMKKEGIEIGDEYRPDSWLPYCAVAQDVPKARMADAFCVLRDLRLPVSGYAMDIGVVEFSPVREFCSFMLGNALE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	0	1
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	1.4	0.8756
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	3.5	0.8721
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	3.6	0.8947
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	5.2	0.8462
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10041372 [exp]	8.1	0.8570
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	11.0	0.8600
AT5G02420			unknown protein		Lus10037925 [exp]	11.4	0.8392
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	12.2	0.8444
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	13.4	0.8551
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	14.5	0.8073

Compare expression of checked genes

Lus10039477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.