Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 338 / 2e-114 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 283 / 5e-93 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 280 / 7e-92 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 234 / 2e-74 EamA-like transporter family (.1) AT5G40210 227 / 1e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28100 218 / 4e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28080 209 / 1e-64 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28070 207 / 1e-63 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21890 153 / 8e-43 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039430 [exp] 497 / 4e-178 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 420 / 7e-147 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 420 / 9e-147 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 362 / 6e-123 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 325 / 9e-110 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 216 / 4e-67 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 202 / 5e-62 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 195 / 4e-59 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10030645 [exp] 182 / 9e-51 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 396 / 2e-137 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 219 / 3e-68 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 216 / 5e-67 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 197 / 7e-60 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 194 / 1e-58 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 167 / 2e-48 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 153 / 6e-43 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 152 / 3e-42 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 150 / 6e-42 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 150 / 1e-41 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039478 pacid=23175658 polypeptide=Lus10039478 locus=Lus10039478.g ID=Lus10039478.BGIv1.0 annot-version=v1.0 ATGACGGGATTTCATTTCCAGAGAGATGCAGTACCGTTCGCAGTGATGGTGAGCTTGCAGATTATCAATGTCGGGATTAACACGCTCTTCAAAGCTGCTA CTGTGGAGGGCATGAATTACCACGTCTTCATCGTTTACGACTATGTAATCGCTACTTTTACTCTGCTTCCTGCTCCTTTCATATCCAAAAGATCAAGAGT TCTTCCACCTTTGAGTTCCTCAATCATGTGCAAAATCGGGCTTCTCGGGATAATAGGGAGCTCATCTCAGATCATGGCATACACAGGCATCAACTACAGT TCGCCAACTCTTGCATCAGCCATCAGCAACCTCACTCCAGCTTTTACTTTCTTGTTTGCCGTCATTTATAGGATGGAAAGAGTTTCTATGAGAAGATCCT CCAGCCAGGCCAAAATTGTGGGTACCGTAGTGGCAATAGTAGGTGCATTTGTGGTTACCCTGTACAAGGGTCCCCCGATTTTCATGCCACCATCCCCATC TGTTCCATCAACTCAGCTAAATCAATCTCTTCACTACTCCTCAACAACGCAACATTGGGTACTTGGTGGGCTTTGTCTCACCGCCAAATATATATTGGAC CCTCTTTGGTACATTGTTCTGACGCAGATAATGAAGGAATACCCTGCAGAACTTACAGTAATATTCTTCTACAACTTGGTTGTATGCATCACAACCGCAG TCTTTGCTCTGATGACCGTAGGGACATTGTCAAGTGCCTGGATGTTGACTACTTACACAGCATTAGCCTCTGTGTTCTGTTCGGGAGTACTTGGATCATC ATTGAGCAATGGAGTTGATGCATGGGTGTTGCGTGTCAAGGGTCCTGTATTTGTGTCCATGTTCAAACCGTTTGCAATGATCGTTGCTGTCACCATGGGA GTGATGTTTCTGGGTGATACTCTACATCTTGGAAGCCTGATTGGAGCAACAACCATAGCCATTGGGTTTTACACGCTGATGTGGGGAAAGGGCAAAGAGG AAGGCGACGCCCCATCGGAAGAGCAAAGCCATGTTAGCAATGGTGGCCTCCTGCCTCACTCCATGGAGAAGGTACCTTTACTGCAGAGTTACAAGGCTGA TGAAGTAGTGAATCATTCAGGGTGA
AA sequence Show only first row Show all	>Lus10039478 pacid=23175658 polypeptide=Lus10039478 locus=Lus10039478.g ID=Lus10039478.BGIv1.0 annot-version=v1.0 MTGFHFQRDAVPFAVMVSLQIINVGINTLFKAATVEGMNYHVFIVYDYVIATFTLLPAPFISKRSRVLPPLSSSIMCKIGLLGIIGSSSQIMAYTGINYS SPTLASAISNLTPAFTFLFAVIYRMERVSMRRSSSQAKIVGTVVAIVGAFVVTLYKGPPIFMPPSPSVPSTQLNQSLHYSSTTQHWVLGGLCLTAKYILD PLWYIVLTQIMKEYPAELTVIFFYNLVVCITTAVFALMTVGTLSSAWMLTTYTALASVFCSGVLGSSLSNGVDAWVLRVKGPVFVSMFKPFAMIVAVTMG VMFLGDTLHLGSLIGATTIAIGFYTLMWGKGKEEGDAPSEEQSHVSNGGLLPHSMEKVPLLQSYKADEVVNHSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	1.4	0.9837
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	2.0	0.9812
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	2.4	0.9805
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	3.0	0.9756
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	3.2	0.9778
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	3.5	0.9779
AT5G65030			unknown protein		Lus10026049 [exp]	3.6	0.9726
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	4.0	0.9758
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	4.5	0.9693
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	5.3	0.9771

Compare expression of checked genes

Lus10039478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.