Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 379 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 271 / 3e-88 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 266 / 1e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40210 236 / 3e-75 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 235 / 7e-75 EamA-like transporter family (.1) AT3G28100 233 / 8e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28080 233 / 1e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28070 214 / 1e-66 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28130 212 / 1e-65 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G70260 144 / 2e-39 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039425 [exp] 565 / 0 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 383 / 8e-133 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 384 / 1e-131 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 371 / 1e-127 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 337 / 8e-115 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 218 / 3e-68 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 214 / 9e-67 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 185 / 2e-55 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039433 [exp] 174 / 1e-51 AT3G28050 175 / 3e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 416 / 2e-145 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 234 / 3e-74 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 227 / 1e-71 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 204 / 9e-63 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 199 / 1e-60 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 150 / 4e-42 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 147 / 1e-40 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 140 / 5e-38 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 138 / 2e-37 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051500 [exp] 135 / 4e-36 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039479 pacid=23175586 polypeptide=Lus10039479 locus=Lus10039479.g ID=Lus10039479.BGIv1.0 annot-version=v1.0 ATGGCAGGGGCAGCTGGAGGATATGTGTACAGAGATGTGCTTGCATTTTCAGTGATGGTGTCTATGGAGTGTATTAATGTCGGGTTGAATACTCTGTTCA AAGCTGCAACTATGGAGGGGATGAGCTACCATGTCTTTGTAGTCTATGCCTATGCAATCGCTGCTCTTGTTCTTCTTCCTGCTCCTTTCTTCTCCCACAG ATCAAGAGTTCTTCCTCCACTAAACTTCCGAATTCTCTGCAAAATCGGGCTTCTGGGGATCATTGGGAGCTCATCTCAGATCATGGGGTACACAGGCATC AATTACAGTTCTCCAACTCTAGCTTCAGCCATCAGTAACCTCACCCCAGCCTTTACCTTCATACTCGCTCTTCTTTTCAGGATGGAAAAGGTTGTGGTGA GGAAAACATCGAGTCAAGCCAAAGTAATGGGCACAATCGTATCAATAGGAGGTGCATTTGTTGTAACTCTCTACCAGGGTCCTGCTATAACAGTTGCCAC ATCACAGTCTGCTCAGCAAAATCAATCCCTCCAAATCTCAGCAAGCCAAAACTGGGTGCTTGGTGGGGTTTTCCTCACCTGTGAGTATATTCTGGTTCCT TTGTGGTACATAGTTCAGACACAGATAATGAAGGAGTACCCAGCTGAACTCACGGTAGTATTCTTTTACAACTTAGTTGTGAGCGTAGTGGCAGCGTTCG TTGCTCTGATATCGGAAGGAACTTCTTCCAGTGCCTGGATATTAAGGCCTAATGTAGCGTTGGCCTCAGTTTTCTGCTCGGGGCTTCTTGGATCGTGCTT GAACAACAGTGTGCATACGTGGGCATTGCGGATAAAGGGTCCTGTATTTGTAGCAATGTTCAAGCCGTTGTCAATTGCTATTGCTGTGGCTATGGGTGTG ATGTTCTTGGGTGACACTCTTCATCTAGGGAGTCTGATAGGGGCAGCAATAATATCCATTGGGTTTTACACTGTGATGTGGGGAAAAGCACAAGAAGAAG AAGACTTTACTGATGACACAAGTGCTAGTTGCAGCAGCAGCCAACATGAAGCTGAGTCAACTGGAAGTGTAAAGGCACCTCTTTTGAAGAGTTATAGGAA TGAACAAGTTTGA
AA sequence Show only first row Show all	>Lus10039479 pacid=23175586 polypeptide=Lus10039479 locus=Lus10039479.g ID=Lus10039479.BGIv1.0 annot-version=v1.0 MAGAAGGYVYRDVLAFSVMVSMECINVGLNTLFKAATMEGMSYHVFVVYAYAIAALVLLPAPFFSHRSRVLPPLNFRILCKIGLLGIIGSSSQIMGYTGI NYSSPTLASAISNLTPAFTFILALLFRMEKVVVRKTSSQAKVMGTIVSIGGAFVVTLYQGPAITVATSQSAQQNQSLQISASQNWVLGGVFLTCEYILVP LWYIVQTQIMKEYPAELTVVFFYNLVVSVVAAFVALISEGTSSSAWILRPNVALASVFCSGLLGSCLNNSVHTWALRIKGPVFVAMFKPLSIAIAVAMGV MFLGDTLHLGSLIGAAIISIGFYTVMWGKAQEEEDFTDDTSASCSSSQHEAESTGSVKAPLLKSYRNEQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	0	1
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	2.8	0.8589
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	3.5	0.8585
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	4.7	0.8216
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	5.3	0.8527
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	6.0	0.8408
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	6.8	0.8062
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	7.5	0.8554
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10034215 [exp]	8.6	0.7562
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	8.7	0.8459
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	8.7	0.8138

Compare expression of checked genes

Lus10039479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.