Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) AT1G34150 77 / 5e-15 Pseudouridine synthase family protein (.1) AT1G09800 74 / 3e-14 Pseudouridine synthase family protein (.1) AT5G35400 55 / 3e-08 Pseudouridine synthase family protein (.1.2) AT2G30320 45 / 0.0001 Pseudouridine synthase family protein (.1) AT1G76120 43 / 0.0003 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037366 [exp] 89 / 2e-19 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1) Lus10023799 [exp] 82 / 4e-17 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10035791 [exp] 77 / 2e-15 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 59 / 2e-09 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10027594 [exp] 57 / 8e-09 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2) Lus10026423 [exp] 45 / 7e-05 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 45 / 0.0001 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206200 [exp] 403 / 3e-140 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 101 / 2e-23 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1) Potri.003G008500 [exp] 72 / 1e-13 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1) Potri.018G147400 [exp] 64 / 8e-11 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10039480 pacid=23175516 polypeptide=Lus10039480 locus=Lus10039480.g ID=Lus10039480.BGIv1.0 annot-version=v1.0 ATGGCTCAGTACATGACTGCTACGGGACCAGGGCTCCCTCTTCCTACTGCTGCTGCCTTGTCTGACAAAAGCTCGATAAATGGAGTCATGTTAAAGCCCA GCAGCAGCTGCACCGGTGATGCAGATGCTTCTGTTTCGCATGGCCTTAATGATTGCAAAAAGTGGCGTTTGGTGGTTTCTTATGATGGCACTCGTTATGC TGGTTGGCAGTTTCAGCAATCCCCTCCGACTATACAATGCTTGTTGGAGAAATCCTTGATTCGAGCGACCAAATTGGATAGGGAACATCTTCAATTAGTT GGAGCTAGTAGGACTGATGCTGGTGTTCATGCTTTGGGTCAGGTTGCACACTTCCTGACACCTTTCAACTATGACACCTTGGACCGTGTTCATGCAGCTC TCAATGGCCTTCTTCCTGTAGACATCCGAGTCCGAGAGATTGCCCCCGCACTCCCTGAATTCCATGCTCGATTCTCGGTCACCAGCAAGCTCTATAGTTA CAGGATCTATAACAATCCCGTGATGGACCCACTTCTGCGCCACTATGCCTACCACTGCCCTTACAACCTCAATGCAGCTATCATGGCAGAAGCTGCCAAG CATTTTGTTGGGCGGCATGATTTCCTGGCTTTTGCCAATGCATCTCGCAATGACCGTGTTCCCCATCCCATCAAGACAATTCTCCGTTTCAACGGATCAC TGATCCAGCTGGATGTAGAAGGTACTGGTTTCTTGTACAGACAAGTCCGCAACATGGTGGCTCTGCTGATTGAAATAGGAAAAGAAGGCATCCCTCCTGA TATGGTTCCTATGATATTGGCCAGTCGTGATCGGAGGGAGCTGGCCAAGTATACATCAATGTCAGCCCCACCTCAGGGTCTCTGCCTAGTTTCTGTCAAT TACAAGCAAGACCACCTCCGCCTTCCTCAACTGGGGTACCCGGCTGTTAGTTTCGGAAGGCATCAGACAATCAGCAAATTTGAGTTGTTCTATCTCGGGT TCGACAGACTCCTAGGACTGGATCAGGAAGGGGAGATCCATTTGGATGACATGGGAGCCAGCTCTCGTGATGTAGGCCTCGACAGACTCCTTGCTGGCGA TTTTCGTGAGGTTCTAACCGACGATGATGCTTTTCGTCCTCGGTCACAGTATCTAGCCGATGATGCCTAA
AA sequence Show only first row Show all	>Lus10039480 pacid=23175516 polypeptide=Lus10039480 locus=Lus10039480.g ID=Lus10039480.BGIv1.0 annot-version=v1.0 MAQYMTATGPGLPLPTAAALSDKSSINGVMLKPSSSCTGDADASVSHGLNDCKKWRLVVSYDGTRYAGWQFQQSPPTIQCLLEKSLIRATKLDREHLQLV GASRTDAGVHALGQVAHFLTPFNYDTLDRVHAALNGLLPVDIRVREIAPALPEFHARFSVTSKLYSYRIYNNPVMDPLLRHYAYHCPYNLNAAIMAEAAK HFVGRHDFLAFANASRNDRVPHPIKTILRFNGSLIQLDVEGTGFLYRQVRNMVALLIEIGKEGIPPDMVPMILASRDRRELAKYTSMSAPPQGLCLVSVN YKQDHLRLPQLGYPAVSFGRHQTISKFELFYLGFDRLLGLDQEGEIHLDDMGASSRDVGLDRLLAGDFREVLTDDDAFRPRSQYLADDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	0	1
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	2.0	0.7937
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	6.9	0.8160
AT5G65920			ARM repeat superfamily protein...		Lus10012491 [exp]	12.7	0.7640
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	22.2	0.7892
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Lus10002619 [exp]	23.6	0.7449
AT3G25150			Nuclear transport factor 2 (NT...		Lus10025906 [exp]	25.5	0.7742
AT4G38380			MATE efflux family protein (.1...		Lus10014441 [exp]	26.8	0.7362
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	27.7	0.7786
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	29.5	0.7796
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	31.9	0.7097

Compare expression of checked genes

Lus10039480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.