Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40240 224 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 220 / 7e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28050 201 / 1e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 195 / 1e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 186 / 5e-56 EamA-like transporter family (.1) AT1G70260 181 / 5e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28070 174 / 4e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28130 173 / 7e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28100 167 / 6e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 158 / 4e-45 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010695 [exp] 228 / 2e-72 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 213 / 3e-66 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 213 / 4e-66 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034877 [exp] 210 / 2e-65 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 209 / 2e-64 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 187 / 1e-56 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 185 / 2e-54 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 181 / 5e-54 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029180 [exp] 179 / 8e-54 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073200 [exp] 270 / 2e-88 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 256 / 3e-83 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 231 / 2e-73 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G337100 [exp] 224 / 2e-70 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 221 / 3e-69 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 211 / 9e-66 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 173 / 2e-50 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 172 / 3e-50 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 168 / 7e-49 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 166 / 3e-48 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10039481 pacid=23175568 polypeptide=Lus10039481 locus=Lus10039481.g ID=Lus10039481.BGIv1.0 annot-version=v1.0 ATGGAACTGGGTTCTTTGATGAAGGTTGCAATACCTTTTGTTGCAATGGTGGCTGTTGACTTTTCAGATGTTGTAATTTCTGCAATCAGCAAAGCCGCCA TGGCTAAAGGGATGAGCAACTTTGTTTCTGTTGTCTACTACAATGCCCTTGCCACTCTCATCCTTCTTCCTTACTTCCTCTTCTTCAGGAAGGAGAGGGC TCCCCTTACCCTTCACCTGCTCTGGAGATTCTTCCTTCTTGCCTTGATAGGGAGTACAGGACAAATGGCATACCTCACGGGGGTCAAGTTGAGTTCCCCC ACACTTGCGTCCGCTATCACTAATCTCAATCCGATTTTCACCTTCTTGCTTGCTATCCTTACAAGGATGGAAACTGTAGATTTACGAATAAGGGCGAGTC AAGTTAAATGTATTGGCGCAATTGTGGCAGTAACCGGAGCACTTGTCGTTACCTTGTACAAAGGCCCGGCAATTTTGCAGCCTCCAATTGGTTTGAACTC ATACCAACATCAGCCTCTTGCCTCAGAACAGTCAGATTGGATCGTCGGCAGTGTACTTTTTGCAGTCGTGGCTTTCATGACTGCAACGTGGAATGTGGCC CAGGGTGCTACTGTGAAGCAGTATCCAGAAGAGATGACAATTGTCTTCTTTTTCACCTTGTTCATCACAATCCAGTCTGCAGTGTTCTCGATAGTTTTGG AGAAAAATCCAAATGCGTGGAAATTGAAGTCTCCCATAGAGTATATTGCCATCGTTTATACGGCAATGTTCGGGAGTGTATTCCGCATTGGCCTTAGAAC ATGGTGCTTGCGGGAGAAAGGGCCCCTATTTGTAAGTATGTTCAGTCCGCTGGGGATTGGGATTGCGGTGGTTATATCAGTGATGTTCCTTGGTGATGGC CTTTATCTTGGCAGTGTGATTGGGATCATAGGAATTGGAGTTGGATTCTACAGCGTGATGTGGGGGAAAATTAAAGAGGAAGAGGAACGAACAGCTATGG CCAGAATTGTAAAAACAGAAGAAGAACCATTGATCATTTGA
AA sequence Show only first row Show all	>Lus10039481 pacid=23175568 polypeptide=Lus10039481 locus=Lus10039481.g ID=Lus10039481.BGIv1.0 annot-version=v1.0 MELGSLMKVAIPFVAMVAVDFSDVVISAISKAAMAKGMSNFVSVVYYNALATLILLPYFLFFRKERAPLTLHLLWRFFLLALIGSTGQMAYLTGVKLSSP TLASAITNLNPIFTFLLAILTRMETVDLRIRASQVKCIGAIVAVTGALVVTLYKGPAILQPPIGLNSYQHQPLASEQSDWIVGSVLFAVVAFMTATWNVA QGATVKQYPEEMTIVFFFTLFITIQSAVFSIVLEKNPNAWKLKSPIEYIAIVYTAMFGSVFRIGLRTWCLREKGPLFVSMFSPLGIGIAVVISVMFLGDG LYLGSVIGIIGIGVGFYSVMWGKIKEEEERTAMARIVKTEEEPLII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	2.8	0.9206
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	4.2	0.9339
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	4.7	0.9409
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	7.9	0.9192
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	9.7	0.9250
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	10.0	0.9260
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	10.1	0.9330
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	11.8	0.9180
					Lus10020249 [exp]	14.0	0.8905
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10022606 [exp]	14.5	0.9111

Compare expression of checked genes

Lus10039481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.