Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28030 46 / 1e-05 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039424 [exp] 360 / 8e-116 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070500 [exp] 58 / 1e-09 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039482 pacid=23175455 polypeptide=Lus10039482 locus=Lus10039482.g ID=Lus10039482.BGIv1.0 annot-version=v1.0 ATGAAAGAACCTTCTTTCACGAACTTTATTGGTGATGGTGTATCCATTGAAGTCATGGGTCTCAGAACTACCAGGCAGCAAACTATTGTCTTGCTCAAAT CAAATCGATTGAGACAGCAAGTAAGTTTAACCGATGACATGGATTTGGATGATGTGATGGAGTCTGTAGACCTGAACAGTGAAAGAAAAGCAGGAACAGC TGACTCGAATCCCCAGAATGCTGACTCAAGTTCAGCTAGAGAACATCAAAATGTGGAAGATATTCCTCTGCAGAATGATTCGCCTGGGGACCATCTTGAA ACAGGAGGTGGGTTTTGCATTGATGAAGATGAGGCTGGTCACTTTGACGCAGGTGAGAACTGTAATCCTTCTGAAGGCAATGCTTCAATAGATTACTTAG AGAGCGGAGGTGGGTTTTGTGTGGACGATGACCAATGTGGGACCAGTAAAGTGGCTACAGCTCTTGCTGAAGAAGGCACCGAAAAATTCAGCGGTGGAGG TGCGATGGATGATGTGGAGTTCGCTGCTTTGTCAGTAAGCACAACCGATGGTTGGTACGAATCATGGGTGGATGCCATGAACACAAGTAGAGTTGTTAAG GATCCAAACACTCAGGGAGTGGGAAGTACAGAAAGTGAGGATCATTTCATGATGAGCAGCGCAGCTCATCCTGAAAACAATGTAAAGAGTAGAGGGATGA TGTAG
AA sequence Show only first row Show all	>Lus10039482 pacid=23175455 polypeptide=Lus10039482 locus=Lus10039482.g ID=Lus10039482.BGIv1.0 annot-version=v1.0 MKEPSFTNFIGDGVSIEVMGLRTTRQQTIVLLKSNRLRQQVSLTDDMDLDDVMESVDLNSERKAGTADSNPQNADSSSAREHQNVEDIPLQNDSPGDHLE TGGGFCIDEDEAGHFDAGENCNPSEGNASIDYLESGGGFCVDDDQCGTSKVATALAEEGTEKFSGGGAMDDVEFAALSVSTTDGWYESWVDAMNTSRVVK DPNTQGVGSTESEDHFMMSSAAHPENNVKSRGMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	0	1
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	2.8	0.7842
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10032438 [exp]	7.2	0.6353
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	10.1	0.7727
AT2G15130			Plant basic secretory protein ...		Lus10013864 [exp]	13.0	0.7009
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	14.8	0.6321
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	20.3	0.7288
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	20.7	0.7272
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10000128 [exp]	22.6	0.6541
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	23.8	0.7158
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	24.5	0.6864

Compare expression of checked genes

Lus10039482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.