Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 225 / 4e-65 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G05160 198 / 3e-55 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 196 / 3e-54 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 190 / 2e-52 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 187 / 2e-51 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 173 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT5G41680 166 / 3e-46 Protein kinase superfamily protein (.1.2) AT3G02880 167 / 2e-44 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 167 / 2e-44 RLK902 receptor-like kinase 902 (.1) AT5G53320 166 / 3e-44 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039422 [exp] 832 / 0 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032162 [exp] 561 / 0 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 559 / 0 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10002360 [exp] 387 / 2e-126 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 311 / 1e-97 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10004040 [exp] 219 / 5e-63 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10021673 [exp] 206 / 5e-58 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 202 / 2e-56 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 192 / 4e-53 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 409 / 1e-135 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 316 / 9e-100 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 207 / 9e-59 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G097200 [exp] 207 / 2e-58 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 197 / 6e-55 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 196 / 9e-55 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 194 / 8e-54 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 193 / 1e-53 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 192 / 5e-53 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 186 / 5e-51 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039483 pacid=23175722 polypeptide=Lus10039483 locus=Lus10039483.g ID=Lus10039483.BGIv1.0 annot-version=v1.0 ATGAATCAATTTCCCATCTGGGCCATTTTCATTTCCCTCTTCCTCTTCTCCCTCCACTCTACTGCTAATTCATTAGCAGACGATGACGTCAAGTACTCGC TCATCAGCCTCCTGGCAAACCTGACCCGTCTTTTGGTTGGGTTGAATATACTCATCCTTGCCTTAATCCCTGGCCTGGTATTACCTGTGATGCTTCCAAT AACTCTATTACCAAGATCTTTCTTTCAGGACTTCACCTCTCAGCAGAACCAGATTGTTGTCCAACTCACACCACATATCTCTAACTTCACAAACCTCACT CACTTGCTTCTGGGCAAGAACAATTTCTCTGGACGCCTTCCCGACTCTCTAATCAAGCTGAACAATCTCCGAAAACTTGGTTTCTCCCACAACTTCTACG GCGAGATAACACTATTCATTGCCCAGGGGAATCATTTCACAAGTCCATTACCACAGCTAGACTTCCTGAAACTTGAGAAGTTTGATGTATCCCACAACAA CTTCAGTGGCCAAATTCCTGATGTCCATGGAAAGTTCAATCAGAACAGTTTTCTGGACAACCCTGACCTCTGCGGCTCTCCATTGCCAAAGCTGTGTATA CCTTGGAACACAAGCAAATCAGAAACTCAAAATTTCAATGATGGCATTGGCAGCAAGAAGAACTCGAACGGTTTGTCGAGAAATCAGATTCTGATGTACT CTGGGTACATCGTTCTTGGATTAGCACTCGCCAGTTTCATCATTTGCAAGATGTACATGAGAAATAAGAGCGGTGGTGGTGGGTCTAAGAAAGGTGATAT GGAGAACCACAGGGTTGTTGCTTCAGTAGATGAGGGTAGTAGTAGCTCAGATCATGGAAACCATGGTGGTCATTCCTGGGACAGCAAATCAGAGCTGTCT GAAAGTGCATTGTTGTCTTCCTCTCTCGTTGTCCTCACTAGTAGCATTGAAGGGAACAGTGGGATTGATTTCGACCAGCTACTCAAGGCTCCATCTGAGT TGCTGGGCAGGGGGAAGCATGGAAGCCTGTACCAGGTTAATTTGAGCAGTGGGATGACAGTGGTTGTCAAACGAATCAAGGATTGGCCAATTCCTAGTGC TGAGTTCAAACACAGGATGCACAGGATCCACCGAGCTGCTACCCATCCAAACGTGTTGCCTCCACTTGCATTTTACTATTCCCAACATGAGAAACTTCTA GTCTATGCTTATCAGAGAATGGAAGTCTCTTCAGATATATCCATGATGGGACAAGCATTTGAGTGGAGTAACAGGCTAAGAGTAGCTGGCACCATTGCTG AAGCTTTAGCGTTCATGCACAAGAAGCTTTATGATGACGGGATTGGCCATGGGAACCTGAAATCCTCCAACATACTGCTGAACCGCAACCTGGAGCCTTG CATGAGCGAGTATGGACTGATGCCATCTGCACAAGACAAAGACGAGGGCTCAAACAGCTTCAGTTTCAGTGAGGTAAAGCAGGCCAATAAAAATTCCAGC ACATTCAGATCAGACGTTTATGGGTTTGGAGTCATCCTGCTCGAACTGCTGACTGGGAAGACGGTGCAGAACAACGGAATCAGCTTGCCTAGGTGGGTCC ATAGCGCGGTTAGGGAAGAATGGACAGTGGAGGTTTTCGACAAGCAACTTATATCAGAAGGTGCAAGTGAAGAAAGAATGTTGAATTTGCTTCAAGTTGC TATCAACTGTGTCCACGAATCTGAATACGACAGGCCTTCTATCAATCGAGTCGCAGTTATGATCAACGCGATAAGAGAAGAACATGAGAGATCTGCGATG ACTACTTACTGA
AA sequence Show only first row Show all	>Lus10039483 pacid=23175722 polypeptide=Lus10039483 locus=Lus10039483.g ID=Lus10039483.BGIv1.0 annot-version=v1.0 MNQFPIWAIFISLFLFSLHSTANSLADDDVKYSLISLLANLTRLLVGLNILILALIPGLVLPVMLPITLLPRSFFQDFTSQQNQIVVQLTPHISNFTNLT HLLLGKNNFSGRLPDSLIKLNNLRKLGFSHNFYGEITLFIAQGNHFTSPLPQLDFLKLEKFDVSHNNFSGQIPDVHGKFNQNSFLDNPDLCGSPLPKLCI PWNTSKSETQNFNDGIGSKKNSNGLSRNQILMYSGYIVLGLALASFIICKMYMRNKSGGGGSKKGDMENHRVVASVDEGSSSSDHGNHGGHSWDSKSELS ESALLSSSLVVLTSSIEGNSGIDFDQLLKAPSELLGRGKHGSLYQVNLSSGMTVVVKRIKDWPIPSAEFKHRMHRIHRAATHPNVLPPLAFYYSQHEKLL VYAYQRMEVSSDISMMGQAFEWSNRLRVAGTIAEALAFMHKKLYDDGIGHGNLKSSNILLNRNLEPCMSEYGLMPSAQDKDEGSNSFSFSEVKQANKNSS TFRSDVYGFGVILLELLTGKTVQNNGISLPRWVHSAVREEWTVEVFDKQLISEGASEERMLNLLQVAINCVHESEYDRPSINRVAVMINAIREEHERSAM TTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10039483 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	4.7	0.7429
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037755 [exp]	13.6	0.5799
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	15.0	0.6565
					Lus10021453 [exp]	19.4	0.6491
					Lus10038720 [exp]	20.6	0.6304
					Lus10015310 [exp]	22.3	0.6401
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	23.7	0.6212
AT5G44150			unknown protein		Lus10035461 [exp]	28.1	0.5774
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10028794 [exp]	28.1	0.5979
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	30.5	0.6285

Compare expression of checked genes

Lus10039483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.