Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 363 / 5e-120 NHL domain-containing protein (.1.2) AT1G23880 353 / 7e-116 NHL domain-containing protein (.1) AT5G14890 307 / 8e-96 NHL domain-containing protein (.1) AT3G14860 222 / 6e-66 NHL domain-containing protein (.1.2) AT1G23890 148 / 6e-41 NHL domain-containing protein (.1.2) AT1G56500 49 / 1e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039421 [exp] 431 / 1e-149 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10014529 [exp] 357 / 2e-118 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10029176 [exp] 355 / 1e-116 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10032158 [exp] 344 / 1e-113 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10012989 [exp] 328 / 1e-106 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 326 / 1e-104 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10030849 [exp] 144 / 5e-38 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030637 [exp] 104 / 4e-24 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030639 [exp] 92 / 4e-20 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092200 [exp] 511 / 3e-178 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 452 / 5e-155 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 440 / 2e-150 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 220 / 1e-64 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 215 / 2e-63 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 134 / 2e-34 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 127 / 4e-32 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 47 / 1e-06 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.013G007800 [exp] 51 / 2e-06 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.009G072933 [exp] 40 / 0.0002 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10039484 pacid=23175534 polypeptide=Lus10039484 locus=Lus10039484.g ID=Lus10039484.BGIv1.0 annot-version=v1.0 ATGCGCCGGCAATGGATGGCTTCTGCTCTTATTTGCTTGCTTCTCCTTAATGCCTTTTCTTCAGCTTCAGCGACTACTACTCCTGCAAGAATTGTGGCTG GAGTTGTTTCCAATGTGGTTTCTGCACTTGCTAAATGGATATGGTCCCTCAAATCCAACCCCAAAACAGTTTCAAGGTTGAAGGGCCTGATGGGTGTGGA TGGCTCCTCTTCATCCGTTTCTGGGCGTTCCATGGTCAAATTTGAAGATGGGTATACTGTGGGGACGGTGTTCGATGGAAGTAAGCTTGGTATTAACCCT TTCTCTGTTGAGGTTTCTCCTACTGGTGAGCTCATGATTTTGGATTCACAGAACAGTAACATTTACAAGATCCAAACTCCACTCTCCAAATATAGCAGGC CCAAACTGGTTGCTGGATCACCTGAAGGCTATACTGGCCAAGGTGAGGGCAAGTTAAGAGAGGCAAGAATGAATCATCCCAAAGGTCTTGCTGCTGACGA CAGAGGAAACATATACATTGCGGACACCATGAACATGGCAATAAGGAAGATTAGTGAGGGAGGAGTTACAACTATTGCAGGTGGAGGAAAATGGAGTCGA GGAGGTGGCCATGTTGATGGGCCAAGTGAAGACTCCATACTATCTACCGATTTTGATGTGCACTATGTTGGAACTAGTTGCTCTCTTTTGGTTGTAGACA GAGGGAACCAGGCAATTAGAGAAATCCAACTCCATGACGAGGATTGCGACTATGGAGATGATACTACTTACCCCTTGGCAATTGTAATGCTTATTGTTGC TGGGTTCTTGGGATACATGATGACAAAAGGTTTGAAGGTGCTATTATATAATGTCTGCCAGGAACCAAGAATGTACGCAAATAAAGTCATGTCAATGCCA CCATATCAGAGGCCACCTCAATCAGTGAGACCCCCTTTGATTCCAAACGAAGAGGAATATGAGAAACCAGAAGAAGGCTTTATGGGTTCAGTTGGGAGAC TGGTTGCCAACACTGGAACAAGTGTGGGTGAAATACTAGGGGGGTTATTTTCAGGGTTCAGAAGGAAACCTCAAAATTATCAGTTCCAACAGCAACAGTA TCAACTACATCAACAGTATCAACAATCTCACCAACTCAAGCATTTGAACTCATCATGGCCAATGCAGAAAAGCTATGTGATTCCAGATGAAGATATCCCA CCACCACCACCACTTGAGTCCAGATATCCTACACCCAAGAACTCTCATCCGTCCATGAACAAGGAACCGCAGCAAAAGAATCAAGATGTAAAGCCGAACC AGCAGCATTACAGCAGCGGATGGGATGAAGATTATGAGCAGCAGCAGCAACAAATGCAGCAGCATCAACAACGTCAACAGCATCATCGGCACAGGCAGCA AGTTTCAAATCCAAAGACATACTATGAGAAAGGTAGTGAGTCAAATGAGATAGTGTTTGGAGCAGTACAAGAACAGGATGGTCGTCGAGAAGCAATGGTG ATAAAGGCTGTGGACTATGCAGATCCTAGGTATAACCAACATAACATTCGACCCAGGTACAACTATGTTGGTTATTCTCATGCTTACCAGTCATGA
AA sequence Show only first row Show all	>Lus10039484 pacid=23175534 polypeptide=Lus10039484 locus=Lus10039484.g ID=Lus10039484.BGIv1.0 annot-version=v1.0 MRRQWMASALICLLLLNAFSSASATTTPARIVAGVVSNVVSALAKWIWSLKSNPKTVSRLKGLMGVDGSSSSVSGRSMVKFEDGYTVGTVFDGSKLGINP FSVEVSPTGELMILDSQNSNIYKIQTPLSKYSRPKLVAGSPEGYTGQGEGKLREARMNHPKGLAADDRGNIYIADTMNMAIRKISEGGVTTIAGGGKWSR GGGHVDGPSEDSILSTDFDVHYVGTSCSLLVVDRGNQAIREIQLHDEDCDYGDDTTYPLAIVMLIVAGFLGYMMTKGLKVLLYNVCQEPRMYANKVMSMP PYQRPPQSVRPPLIPNEEEYEKPEEGFMGSVGRLVANTGTSVGEILGGLFSGFRRKPQNYQFQQQQYQLHQQYQQSHQLKHLNSSWPMQKSYVIPDEDIP PPPPLESRYPTPKNSHPSMNKEPQQKNQDVKPNQQHYSSGWDEDYEQQQQQMQQHQQRQQHHRHRQQVSNPKTYYEKGSESNEIVFGAVQEQDGRREAMV IKAVDYADPRYNQHNIRPRYNYVGYSHAYQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	0	1
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	1.0	0.9088
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	1.4	0.8669
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	4.7	0.8028
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	5.5	0.8287
AT5G52882			P-loop containing nucleoside t...		Lus10039309 [exp]	6.7	0.8031
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	6.9	0.8343
AT5G55960			unknown protein		Lus10016650 [exp]	8.4	0.7978
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	8.7	0.8309
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	9.3	0.8473
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	10.2	0.8107

Compare expression of checked genes

Lus10039484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.