Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14550 213 / 3e-69 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 209 / 2e-68 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 209 / 9e-68 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT3G04730 185 / 2e-58 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G29080 141 / 2e-40 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 138 / 4e-39 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 137 / 1e-38 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT5G43700 108 / 4e-29 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 107 / 7e-29 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 105 / 6e-28 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039414 [exp] 360 / 7e-127 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 197 / 2e-62 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10019241 [exp] 146 / 3e-42 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 145 / 4e-41 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10006585 [exp] 140 / 1e-40 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10011583 [exp] 140 / 6e-40 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 139 / 8e-40 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 139 / 1e-39 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10012984 [exp] 132 / 1e-36 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161200 [exp] 239 / 2e-79 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 228 / 9e-75 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.013G041400 [exp] 214 / 1e-69 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 203 / 2e-65 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 191 / 8e-61 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 186 / 9e-59 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.001G177400 [exp] 140 / 4e-41 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1) Potri.006G161400 [exp] 137 / 8e-39 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 135 / 1e-37 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 135 / 1e-37 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10039487 pacid=23175695 polypeptide=Lus10039487 locus=Lus10039487.g ID=Lus10039487.BGIv1.0 annot-version=v1.0 ATGGCGAGCTGCGATTTGAACCTCAAAGCCACGGAGCTCTGCCTCGGCCTCCCTGGCGCTGTAGGCAAAGTTGAGAAGATGCTGGAGAACACAGCTCCTA ATCTTCATCCTAAGGTGACCGGAAAAAGAGGCTTCTCCGAGACGGTTGATCTCAAGCTCAATCTGCACTCCAACAACCTCGTTGACGGCGGAGCTATTGC TGATGATCATCATAAGCCAAATAATAATATTAATACTGCCCAAACGAACTCATCTACTGATGCACCCATCAAGGACCCCACCAAGCCACCCGCCAAGGCG CCAGTGGTGGGATGGCCACCAGTGAGGTCTTACAGGAAGAACGTGATGGCAGTAGTACAGAAGAGCAACCGCGCCGGCGATGAAGATAATAATGGAAAGA GCAGCACGGTGGGTGCATTTGTGAAGGTGTGCATGGACGGAGCACCCTACCTTAGGAAAGTGGACTTGAACCTGTACAGCAGCTACCACCAGCTCTCTCT TTCCCTCGCCAATATGCTCTCCTCCTTCACTACGGGTAATATTGGAGAGGAAGGAATGATAGACTTCATGAACCAGAGGAAGCTGATGGATCTACTCAAC GGCTCAGAGTATGTGCCAACCTATGAGGATAAGGATGGGGACTGGATGCTTGTGGGAGATGTTCCCTGGGAAAAAGAAGATGAAGAAGTAGTCACAGTTG GAGCTCTGGTTAATGTAAGGGGAAGATGGAGGGATAAGGATGACCAATAA
AA sequence Show only first row Show all	>Lus10039487 pacid=23175695 polypeptide=Lus10039487 locus=Lus10039487.g ID=Lus10039487.BGIv1.0 annot-version=v1.0 MASCDLNLKATELCLGLPGAVGKVEKMLENTAPNLHPKVTGKRGFSETVDLKLNLHSNNLVDGGAIADDHHKPNNNINTAQTNSSTDAPIKDPTKPPAKA PVVGWPPVRSYRKNVMAVVQKSNRAGDEDNNGKSSTVGAFVKVCMDGAPYLRKVDLNLYSSYHQLSLSLANMLSSFTTGNIGEEGMIDFMNQRKLMDLLN GSEYVPTYEDKDGDWMLVGDVPWEKEDEEVVTVGALVNVRGRWRDKDDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	0	1
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	1.0	0.9330
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	2.4	0.9295
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	3.7	0.9328
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	6.0	0.9250
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	7.3	0.9124
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	7.5	0.8957
AT5G23160			unknown protein		Lus10013437 [exp]	8.1	0.9227
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	8.5	0.9048
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	9.5	0.8940
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	11.0	0.9022

Compare expression of checked genes

Lus10039487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.