Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04230 200 / 2e-61 Protein of unknown function (DUF2361) (.1) AT5G43720 178 / 5e-53 Protein of unknown function (DUF2361) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039411 [exp] 360 / 1e-123 AT1G04230 332 / 4e-113 Protein of unknown function (DUF2361) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160800 [exp] 256 / 3e-83 AT1G04230 185 / 6e-56 Protein of unknown function (DUF2361) (.1) Potri.010G078500 [exp] 242 / 1e-77 AT1G04230 230 / 3e-73 Protein of unknown function (DUF2361) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10153 [flax] [poplar] Efg1 rRNA-processing protein Efg1
Representative CDS sequence Show only first row Show all	>Lus10039489 pacid=23175500 polypeptide=Lus10039489 locus=Lus10039489.g ID=Lus10039489.BGIv1.0 annot-version=v1.0 ATGGCCCACGGTGGCTATGGCAAGCGCAGGGTCGCCTCGCCCAGGGTCGCCGGCCGCCAACCTTCTGTCGGCCGCCGGTCCAAGCCAATCGACAAGAAAG CGAAATCCAAACCCATCACCTACCAGATTCGTTCTGTGGTGCGCATGCTCCGTAGGGAACTAACGCCAGAAGTAAGAGAGGCTCAAGAGAAGAAGTTAGA AGGGTTGAAGAAGGAGCAGGAACTCCACACTCGCTTGGCTCTTGAGCGCACAATATTCTTGCGAGATAAGAAGATTAAATTCTTTGAAAGGAGGAAGATA GAACGAAGGATCAGACGCCTGGAGAAACAACAGCGTGCTTCATCCGGCCAGGCACAAGATGCCGAGGCTGCTGCCCAACTTTCCAAGTTGAAAGAAGATC TCGAATACGTTAGATTTTTCCCCAAGACAGAAAAGTATGTCTCTTTGCTTTCTGGCGGAGATGATTCAGAGGTAGTTGATAAGAGAAATAGATTGCGCAA GCAGATTAAAGCCAACCTAAGTGCTGCTGCTGCCAGTGGCAAAGATTTGGAAGAGACAGGGAGTGAAGATGATGGGCTTTTGGATCTCAGTGAGGATGAC TTCTTCCTAGCAGGAAGCTCTAGCGATGAAGCAGATGCAGATGATGAGTGGACAGACAAAAGCACAAAAGAACAGGCGTCAAGTACTTCTGGTAAAGCAG CATCTGGTATGTCAAGCGATGAAAAGAATCAGAGGCAGATCTCAGCAAGAGCTCTGATGCCTCCTCCTCGGCCTTCAAACAATGCAAGTGCCAACTCAGT ACGTGGGCGGTCAAGATTTGGAGCATCGTCAAGTACGAACACGGGGAGACAGAGGGCTGAAACATCTACTTCCAGCAATACTTCAAGCAGCAAAAGTGGC TCCTCTTTTAAAGTCGGCATTTCTTCAAATGCAAGGACTGGCAATAGCAGTAATGTAAGTTCTGGCTCTGATGCTCAAAAGCCACGCAGGAAGAGGAAGA GAAGAAAGAAGAAGCAACAGGTACGACACCTTGTTTTCCATCCTGCTTTGTTGGCACTTTATTTCGGGATAGTAGAAGTAAAATGCTAA
AA sequence Show only first row Show all	>Lus10039489 pacid=23175500 polypeptide=Lus10039489 locus=Lus10039489.g ID=Lus10039489.BGIv1.0 annot-version=v1.0 MAHGGYGKRRVASPRVAGRQPSVGRRSKPIDKKAKSKPITYQIRSVVRMLRRELTPEVREAQEKKLEGLKKEQELHTRLALERTIFLRDKKIKFFERRKI ERRIRRLEKQQRASSGQAQDAEAAAQLSKLKEDLEYVRFFPKTEKYVSLLSGGDDSEVVDKRNRLRKQIKANLSAAAASGKDLEETGSEDDGLLDLSEDD FFLAGSSSDEADADDEWTDKSTKEQASSTSGKAASGMSSDEKNQRQISARALMPPPRPSNNASANSVRGRSRFGASSSTNTGRQRAETSTSSNTSSSKSG SSFKVGISSNARTGNSSNVSSGSDAQKPRRKRKRRKKKQQVRHLVFHPALLALYFGIVEVKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	6.0	0.7808
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	6.2	0.7956
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	9.8	0.7540
AT1G42440			unknown protein		Lus10013232 [exp]	11.5	0.8083
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	17.7	0.7755
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	19.1	0.7814
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	21.5	0.7952
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	21.5	0.7974
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	22.4	0.7523
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	23.2	0.7673

Compare expression of checked genes

Lus10039489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.