Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10710 717 / 0 SPT16 global transcription factor C (.1) AT4G10670 498 / 8e-176 GTC2 GTC2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039410 [exp] 867 / 0 AT4G10710 1389 / 0.0 global transcription factor C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G004500 [exp] 753 / 0 AT4G10710 1521 / 0.0 global transcription factor C (.1) Potri.005G005000 [exp] 734 / 0 AT4G10710 1535 / 0.0 global transcription factor C (.1) Potri.013G004600 [exp] 719 / 0 AT4G10710 1460 / 0.0 global transcription factor C (.1) Potri.005G005300 [exp] 667 / 0 AT4G10710 1381 / 0.0 global transcription factor C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF08644 [flax] [poplar] SPT16 FACT complex subunit (SPT16/CDC68) CL0266 [flax] [poplar] PH PF08512 [flax] [poplar] Rtt106 Histone chaperone Rttp106-like
Representative CDS sequence Show only first row Show all	>Lus10039490 pacid=23175643 polypeptide=Lus10039490 locus=Lus10039490.g ID=Lus10039490.BGIv1.0 annot-version=v1.0 ATGATTCAGGTTGACCAGAAGAATGAAGCTGTTCTCATACCAGTATATGGTAGTATGGTTCCTTTCCATGTGGCGACCATAAGGACTGTGTCGAGCCAGC AGGATACGAACAGGAACTGTTATATCAGGATAATCTTCAATTTCCCCGGGACCCCGTTTAGCCAACAAGATGCGAACTCTGTGAAATACCCAGGGGCTAT TTATCTGAAGGAGGTTTCATTCAGGTCGAAGGATCCAAGGCACATTAGCGAGGTAGTACAGCAAATTAAAACTCTTCGCCGGCTTGTGATGACTAGGGAG TCTGAGAGAGCGGAAAGGGCAACCTTGGTCACCCAAGAAAAGTTGCAACTGGCTGGTAACAGGTCTAAGCCTATTAGATTGTCTGATCTTTGGATTCGCC CTGTCTTTGGTGGGCGTGGAAGGAAGCTACCTGGGACACTTGAAGCTCATGTCAATGGGTTTCGCTACTCAACTACAAGGCAAGATGAGCGAGTTGATGT TATGTTTTCTAACATCAAACATGCCATTTTTCAGCCTGCAGAAAATGAGATGATCACTCTCATTCACTTCCATCTGCACAACCATATTATGGTTGGTAAT AAAAAGACTAAGGATGTCCAATTTTATGTGGAGGTCATGGATCAGGTCCAAACTATTGGAGGTGGGAGGAGATCTGCGTATGACCCTGATGAGATTGAAG AAGAACAGCGGGAAAGAGACAAGAAGTACAAAATTAACAGCGAGTATCTCAACTTTGTGAAACGGGTAAACGATCTTTGGGAGCAACCTCAGTTTAGGGA TCTGGACCTTGACTTTGATCAACCTTTAAGAGAGCTTGGTTTCCATGGGGTGCCATACAAGTCGTCTGCTTTCATCATCCCAACTTCATCTTGCCTTGTC GAGTTGATTGAGACACCTTTCCTGGTTGTCACACTTGGGGAGATAGAGATTGTGAATCTTGAGAGGGTTGGCCTTGGGCAGAAGAACTTCGACATGACTA TTGTGTTCAAGGACTTCAAGAAGGATGTGCTGCGGATTGATTCAATCCCTTCAACTGCACTTGATGGCATTAAGGAATGGTTGAACACGACTGATATCAA GTACTACGAGAGCAGGCTGAACTTGAATTGGCGACAAATATTGAAGACAATTACTGATGATCCTCAGAGCTTCATAGACGATGGTGGTTGGGAGTTTCTG AACTTGGAAGCTACTGATTCGGAGTCTGATGGTTCAGAGGAGTCTGATCAGGGGTATCAGCCATCAGGATCAGAGCCGGAGTCTGTCTCGGAAGAAGAGG ATTCTGACAGCGCATCGTTGGTGGAATCTGAAGATGAAGAGGAAGAGGACTCGGAAGCAGACTCTGAGGAAGAGAAGGGAAAGACATGGGAAGAGTTGGA GAGGGAAGCAAGCAATGCAGATAGAGAGAAGGGGGATGAGTCAGACAGTGAGGAAGAGAGGAAGCGAAGGAAGGCTAAGGCTTTTGGCGGGAGGCCGCGT CCTGGCCCTCCTCCCAGTGCTGCCAAGCGGACGAAGTTGAGATGA
AA sequence Show only first row Show all	>Lus10039490 pacid=23175643 polypeptide=Lus10039490 locus=Lus10039490.g ID=Lus10039490.BGIv1.0 annot-version=v1.0 MIQVDQKNEAVLIPVYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNFPGTPFSQQDANSVKYPGAIYLKEVSFRSKDPRHISEVVQQIKTLRRLVMTRE SERAERATLVTQEKLQLAGNRSKPIRLSDLWIRPVFGGRGRKLPGTLEAHVNGFRYSTTRQDERVDVMFSNIKHAIFQPAENEMITLIHFHLHNHIMVGN KKTKDVQFYVEVMDQVQTIGGGRRSAYDPDEIEEEQRERDKKYKINSEYLNFVKRVNDLWEQPQFRDLDLDFDQPLRELGFHGVPYKSSAFIIPTSSCLV ELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTALDGIKEWLNTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFL NLEATDSESDGSEESDQGYQPSGSEPESVSEEEDSDSASLVESEDEEEEDSEADSEEEKGKTWEELEREASNADREKGDESDSEEERKRRKAKAFGGRPR PGPPPSAAKRTKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10710		SPT16	global transcription factor C ...		Lus10039490 [exp]	0	1
					Lus10038266 [exp]	2.6	0.8833
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10009963 [exp]	6.9	0.8419
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	9.5	0.8153
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	10.2	0.8282
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	13.9	0.8504
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	16.2	0.8159
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	19.4	0.8289
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	27.7	0.8279
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	29.0	0.8178
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	30.3	0.8106

Compare expression of checked genes

Lus10039490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.