Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 2325 / 0 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G32250 138 / 2e-33 Protein kinase superfamily protein (.1.2.3) AT1G63700 83 / 9e-16 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT2G31800 80 / 6e-15 Integrin-linked protein kinase family (.1) AT4G18950 77 / 5e-14 Integrin-linked protein kinase family (.1) AT1G62400 75 / 7e-14 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G43850 76 / 1e-13 Integrin-linked protein kinase family (.1.2) AT3G04710 76 / 1e-13 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G66850 75 / 3e-13 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT2G28840 74 / 5e-13 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024136 [exp] 2578 / 0 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024135 [exp] 149 / 8e-40 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001499 [exp] 136 / 9e-33 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 129 / 3e-30 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 123 / 2e-28 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 113 / 3e-25 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002621 [exp] 85 / 9e-17 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024645 [exp] 86 / 1e-16 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 86 / 1e-16 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029600 [exp] 2518 / 0 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 1949 / 0 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.018G026400 [exp] 137 / 4e-33 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G255700 [exp] 135 / 2e-32 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G062000 [exp] 98 / 1e-20 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.017G007800 [exp] 90 / 3e-18 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.001G102900 [exp] 81 / 6e-15 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G142100 [exp] 79 / 1e-14 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.012G143900 [exp] 79 / 2e-14 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 77 / 4e-14 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039491 pacid=23164995 polypeptide=Lus10039491 locus=Lus10039491.g ID=Lus10039491.BGIv1.0 annot-version=v1.0 ATGGCCGGCAAGTGTAGGCATCGGGTAGCTGTGAAGAAAGTGGAGGTTGGGGAGGGGGTGGAAGTGGACTGGGTGCAAGCTCAGCTGGAAAACTTGCGGC GTGCTTCAATGTGGTGTAGAAACGTGTGTACTTTCCATGGTGTTGTGAAAGTGGATGGGTGTTTAGGGCTTGTAATGGATAAGTATTGTGGCTCTGTTCA GTCTGAGATGCAGCAGAATGAAGGAAGGCTCACCCTGGAGCAAATTCTAAGATATGGGGCTGACATAGCACGTGGGGTTGCTGAACTTCATGCAGCAGGT GTTGTCTGCATGAACTTAAAACCTTCCAATCTTCTCCTGGATTCAAGTGGCCGTGCTGTTGTTTCTGATTATGGACTTGCTTCCATTTTAAAAAAACCAA CTTGCCGCAAAGCTAAAACAGAATGTGCTTCTGCCAAAATTCATTCATGCATGGACTGCATAATGCTCAGTCCACACTACACGGCACCAGAGGCTTGGGA GCCGGTCAAGAAGTCTCTGAATCTTTTCTGGGATGATGCAATCGGCATATCTGTGGAATCAGATGCCTGGAGCTTTGGATGTACATTGGTAGAGATGTGC ACCGGTGCTACTCCGTGGGCTGGTCTGAGTGCAGAAGAAGTTTACTGTGCTGTTGTTAAAGCTCGAAAATTGCCTCCACAGTATGCCAGTGTGGTTGGTG TTGGAATTCCTAGAGAATTATGGAAAATGGTCGGTGAATGCTTACAGTTCAAACCATCAAGGAGGCCAACGTTTAATGCAATGTTAGCGATATTCATCCG TCATCTGCAGGAGCTGCCACGTACCCCTCCTGCAAGTCCTGATAATGACTATGTACAAAAACCTGGTTCAAATGTAGCTGAACCATTACCACCATCTGAT TTGGAGGATTTGCCAGACAACTCCAGCCATCTACATAGACTCGTCTCGGAGGGAAATGTAATTGGTGTTAGAGATCTACTAGCAAAGGCTGCATCAGGAA GTAGTGGTGATTCTGTATACAGACTGCTAGAAGCACAGAATGCTGATGGCCAAACAGCACTTCACCTGGCTTGTAGACGTGGGTGTGCAGAACTCGTTCA GACCATACTGGAGTATAGAGAAGCAAATGTTGATGTCCTGGACAAGGATGGTGATCCACCACTTGTTTTTGCTTTAGCTGCTGGATCACCAGAATGTGTT CATGCTCTAATTAGGAGCGGGGCTAATGTCAGATCCCGATTAAGGGAAGGGTTTGGTCCATCGGTTGCTCATGTTTGTGCCTACCATGGCCAGCCAGATT GTATGCGTGAGCTTTTACTTGCTGGAGCGGATCCAAATGCTGTGGATGATGAAGGGGAATCTGTACTACATAGAGCTCTATCAAAGAAGTATACTGATTG TGCTATTGCTATACTGGAAAATGGAGGCTGCAGATCAATGGCTTTTGTGAATTCAAAAAATTTGACACCATTGCACTTGAGTGTAGCAACATGGAGTGTG GCTGTTGTCAGAAGGTGGGTAGAAGTCGCCTCCCAAGATGACATTGCTGAGGCAATTAATATTCCAAGCCCAGTTGGAACTGCCTTATGTATGGCTGCTA GTTCCAAGAAAGATCATGAAATTGAAGGGAGACAATTAGTGCAAATTTTGCTCACTGCTGGAGCAGATCCAACTTCTCAGGATGCACCTCATGGGAGAAC AGCCTTGCACACAGCTTCTATGACTAATGATGTTGAGTTAGTGAAGATAATTCTGGATGCTGGAGTTGATGTGAACATCCGGAACATGCATAACACCATA CCTCTCCATGTAGCTCTGGCCAGAGGAGCAAAATCATGTGTTGGCATACTCTTAAATGCTGGGGCAAATTGCAACATCCAGGATGATGAAGGTGATACTG CCTTTCACATAGCAGCTGATGCTGCAAAAATGATACGGGAAAATCTTGAATGGCTGATCGTTATGCTTGGGAATCCGAATGCAGCCGTTGAAGCAAGAAA TCACAGGCTAGTGGCTTTAGATGATTCAGAAAATGAATGGCTGAACTCTACTGTGCTTTATGTACTTGTTGGTAACAGTGGTAAGACATTACGCGATTAT TTGGAAACTCTGCCACGGGAATGGATTTCTGAAGACCTAATGGAGGCTCTCTTGAAGAGGGGAGTGCATTTATCTCCTACGGTATATGAAGTTGGAGATT GGGTGAAGTTCAAGAGAAGTTTGACCACTCCTGCAAAGGGATGGCAAGCTGCAAAACACAAGAGTGTAGGGTTTGTTCAAACAGTTGTTGACAAGGACAA TCTAGTCGTCTCATTCTGTACTGGGGAGGCTCACGTTTTAGCCAGTGAAGTATGGAAGGTGATTCCCTTGGATCGTGGTCAGCATGTCAGGCTCAAAGCA GAGATAAAAGAGCCAAGGTTTGGATGGCGTGGCCAATTACGAGACAGCATTGGAACTGTCCTGTGTGTTGATGATGATGGCATTTTACGTGTTGGGTTTC CTGGAGCGTCTCGAGGGTGGAAAGCTGACCCCGCAGAAATGGAGAGAGTTGAAGAATTCAAGGTTGGTGACTGGGTTCGTATTCGCCCCACACTAACAAC AGCCAAGCATGGATTAGGATCTGTAACACCAGGAAGCATTGGCATCGTGTATTGCATTAGACCAGATGGTAGTCTTTATTTAGAATTGAGTTATCTTCCA CAGCCATGGCATTGTGAACCAGAGGAGGGTGAAGCTGTTACTCCTTTCAGGATTGGTGACCGTGTATGTGTAAAGCGTTCTGTTGCTGAACCTAGATATG CTTGGGGCGGTGAGACCCATCACAGTGTAGGAAGGGTTAGCGAGATAGAAAACGATGGCTTGTTAATAATTGAAATACCAAATCGACCTATTCCATGGCA AGCTGATCCATCTGACATGGAAAAAGTAGAGGATTTCAAGGTTGGAGATTGGGTCAAGGTAAAAGCTTCAGTTTCTTCTCCTATCTATGGGTGGGAGGAT GTTTCACGGAACAGCATCGGTGTGATTCACAGTTTAGAAGATGACGGCAATATTGGTGTTGCCTTCTGTTTCAGAAGCAAGCCCTTCTGCTGTTCTGTGA CAGATGTGGAAAAGGTTCTTCCTTTTGAGCTAGGACAGGAAGTGCGTGTGATGGCTTCCGTTACTCAGCCACGACTAGGGTGGTCAAATGAAAGTCCTGC AACTGTTGGGAAAATTGCTAAAATTGACATGGATGGAACTTTGAACGTGTTGGTTGCTGGCAGACGTGGTTTATGGAAAATGTCTCCTGGAGATGCAGAA CGGCTTTCCGGATTTGAAGTTGGTGATTGGGTACGCTCCAAACCGAGCCTAGGGACCAGGCCTAGTTATGATTGGAATACTATAGGAAAGGAAAGCTTAG CTGTTGTGCATAGTGTGCAAGAGACCGGTTACCTGGATCTAGCTTGCTGTTTCCGAAAGGGAAGGTGGAGTACTCATTACACGGATGTCGAAAAGGTTCC AAGCATGAAAGTAGGGCAGCATGTACGGTTTCGGACTGGAATTGTTGAGCCAAGGTGGGGCTGGAGGGGTGCTCAGCTTGATTCACGTGGCATAATAACT AGTGTTCATGCTGATGGAGAAGTCAGAGTTGCTTTCTTTGGACTGTCAGGGTTATGGAGAGGCGATCCTGCAGATCTGGAGATAGAGCGAATGTTTGAAG TGGGTGAATGGGTGAGGTTAGCGAAAGATGCAAGCAACTGGAAGTCAATTGCTCCAGGATGCGTTGGTGTTGTACAGGGTATAGGATATGATGGGGATAA ATGGGACGGAAGTACTTACGTGGGGTTTTGTGGCGAACAAGAAAGATGGGTGGGCCCTACTTCTCATCTCGAAAGAGTGGAGAGGCTTGTCGTCGGCCAA AAAGTTAGGGTTAAACTCTCTGTAAAACAACCTAGGTTTGGATGGTCAGGTCATAATCATGGAAGTCTTGGAACAATAGCAGCTATTGATGCTGATGGGA AGTTGAGAATGTACACTCCGGCAGGGTCGAAAACTTGGATGCTTGACCCATCCGAAGTCGAACTAGTGGAGGAAGATGAACTCGGAATAGGGGACTGGGT GAGAGTTAGGAAATCAGTTGCAACGCCTACTCACCAATGGGGAGAGGTAAATCATTCAAGCATCGGAGTAGTGCATCGGATGCAAGGTGGGGAGCTATGG GTTGCATTTTGTTTCATGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATGGAAAGGCTAAGACCATTTGAAATAGGGGACAAGGTAAGGATCCGAGACG GGCTGATAACACCGCGGTGGGGATGGGGAATGGAGACACACACGAGTAAAGGTGAGGTAGTTGGGGTGGATGCAAATGGAAAGTTGAGGATAAAGTTCCA GTGGAGAGATGGGAGGCCATGGATTGGTGATCCTGCTGATATTGTTGTAGACGAAAGCTAA
AA sequence Show only first row Show all	>Lus10039491 pacid=23164995 polypeptide=Lus10039491 locus=Lus10039491.g ID=Lus10039491.BGIv1.0 annot-version=v1.0 MAGKCRHRVAVKKVEVGEGVEVDWVQAQLENLRRASMWCRNVCTFHGVVKVDGCLGLVMDKYCGSVQSEMQQNEGRLTLEQILRYGADIARGVAELHAAG VVCMNLKPSNLLLDSSGRAVVSDYGLASILKKPTCRKAKTECASAKIHSCMDCIMLSPHYTAPEAWEPVKKSLNLFWDDAIGISVESDAWSFGCTLVEMC TGATPWAGLSAEEVYCAVVKARKLPPQYASVVGVGIPRELWKMVGECLQFKPSRRPTFNAMLAIFIRHLQELPRTPPASPDNDYVQKPGSNVAEPLPPSD LEDLPDNSSHLHRLVSEGNVIGVRDLLAKAASGSSGDSVYRLLEAQNADGQTALHLACRRGCAELVQTILEYREANVDVLDKDGDPPLVFALAAGSPECV HALIRSGANVRSRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRALSKKYTDCAIAILENGGCRSMAFVNSKNLTPLHLSVATWSV AVVRRWVEVASQDDIAEAINIPSPVGTALCMAASSKKDHEIEGRQLVQILLTAGADPTSQDAPHGRTALHTASMTNDVELVKIILDAGVDVNIRNMHNTI PLHVALARGAKSCVGILLNAGANCNIQDDEGDTAFHIAADAAKMIRENLEWLIVMLGNPNAAVEARNHRLVALDDSENEWLNSTVLYVLVGNSGKTLRDY LETLPREWISEDLMEALLKRGVHLSPTVYEVGDWVKFKRSLTTPAKGWQAAKHKSVGFVQTVVDKDNLVVSFCTGEAHVLASEVWKVIPLDRGQHVRLKA EIKEPRFGWRGQLRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTTAKHGLGSVTPGSIGIVYCIRPDGSLYLELSYLP QPWHCEPEEGEAVTPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRVSEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVKVKASVSSPIYGWED VSRNSIGVIHSLEDDGNIGVAFCFRSKPFCCSVTDVEKVLPFELGQEVRVMASVTQPRLGWSNESPATVGKIAKIDMDGTLNVLVAGRRGLWKMSPGDAE RLSGFEVGDWVRSKPSLGTRPSYDWNTIGKESLAVVHSVQETGYLDLACCFRKGRWSTHYTDVEKVPSMKVGQHVRFRTGIVEPRWGWRGAQLDSRGIIT SVHADGEVRVAFFGLSGLWRGDPADLEIERMFEVGEWVRLAKDASNWKSIAPGCVGVVQGIGYDGDKWDGSTYVGFCGEQERWVGPTSHLERVERLVVGQ KVRVKLSVKQPRFGWSGHNHGSLGTIAAIDADGKLRMYTPAGSKTWMLDPSEVELVEEDELGIGDWVRVRKSVATPTHQWGEVNHSSIGVVHRMQGGELW VAFCFMERLWLCKAWEMERLRPFEIGDKVRIRDGLITPRWGWGMETHTSKGEVVGVDANGKLRIKFQWRDGRPWIGDPADIVVDES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	0	1
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	6.9	0.8092
AT5G11700			unknown protein		Lus10011144 [exp]	7.1	0.8413
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	11.1	0.8232
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	13.1	0.8173
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	14.0	0.8163
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	15.5	0.8011
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028817 [exp]	15.8	0.7137
AT5G22450			unknown protein		Lus10004878 [exp]	16.9	0.8224
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	17.2	0.8049
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	17.9	0.8070

Compare expression of checked genes

Lus10039491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.