Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47740 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 178 / 8e-57 PPPDE putative thiol peptidase family protein (.1) AT5G47310 171 / 9e-54 PPPDE putative thiol peptidase family protein (.1) AT4G17486 170 / 1e-53 PPPDE putative thiol peptidase family protein (.1.2) AT2G25190 170 / 3e-53 PPPDE putative thiol peptidase family protein (.1) AT1G80690 164 / 5e-51 PPPDE putative thiol peptidase family protein (.1) AT4G31980 160 / 4e-46 unknown protein AT4G25680 68 / 7e-14 PPPDE putative thiol peptidase family protein (.1) AT4G25660 66 / 4e-13 PPPDE putative thiol peptidase family protein (.1) AT3G07090 50 / 2e-07 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040485 [exp] 325 / 3e-114 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 320 / 3e-112 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 221 / 3e-73 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 216 / 2e-71 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 178 / 1e-56 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 177 / 2e-56 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 177 / 2e-56 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 173 / 6e-55 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10007844 [exp] 169 / 5e-53 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134200 [exp] 237 / 2e-79 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 233 / 4e-78 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 233 / 5e-78 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 232 / 1e-77 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 229 / 3e-76 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 188 / 2e-60 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 183 / 1e-58 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 168 / 1e-52 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 167 / 2e-52 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 166 / 8e-52 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10039492 pacid=23165059 polypeptide=Lus10039492 locus=Lus10039492.g ID=Lus10039492.BGIv1.0 annot-version=v1.0 ATGGATAAACAGATACTCATTATCCATACGGAACGAATAACAGCCTTTGTTACCAACACCGTCGTCGAGGTTGAAGGAGGATCACAAAAGGGTAACAGAT GGCAGTCCATCGATACATCTCCTCTCAAGGCAAAGCTAGCTAACAAATTTTGCATCTTCCCAAAGTCAAAGAACCTAGCAAGCTACACTTGCGGCGACAC CCCTGTTTACCTCAACGTGTATGAACTCACTACGGAAAATGGTTATGTCTACTGGGCTGGCCTTGGAATCTTTCACTCTGCTGGTGAAGTCCATGGTGTA GAGTATGCATTTGGAGCCCATGACTTCTCGACCATCGGTGTCTTTGATGTAGAACCACAAAACTTCCTCGGTTACTTGTTCAGGAGGTCCATGTTCATGG GGACGACCACCGTGGATCCTAAGCAGGTCAGGGAATTCATGGAGCGTCAGTCTGCTAACTACAATGGTGATACCTATCATTTGATCTGCAAGAACTGCAA CCATTTCAGCCAGGATATCTGTTTTAAGCTCACCGGGAAGTCTATCCCTAAGTGGGTCAATCGGCTTAGCGAAAATACGTAA
AA sequence Show only first row Show all	>Lus10039492 pacid=23165059 polypeptide=Lus10039492 locus=Lus10039492.g ID=Lus10039492.BGIv1.0 annot-version=v1.0 MDKQILIIHTERITAFVTNTVVEVEGGSQKGNRWQSIDTSPLKAKLANKFCIFPKSKNLASYTCGDTPVYLNVYELTTENGYVYWAGLGIFHSAGEVHGV EYAFGAHDFSTIGVFDVEPQNFLGYLFRRSMFMGTTTVDPKQVREFMERQSANYNGDTYHLICKNCNHFSQDICFKLTGKSIPKWVNRLSENT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47740			PPPDE putative thiol peptidase...		Lus10039492 [exp]	0	1

Compare expression of checked genes

Lus10039492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.