Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56710 44 / 6e-06 SIB1 sigma factor binding protein 1 (.1) AT2G41180 42 / 3e-05 SIB2 sigma factor binding protein 2, VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039493 [exp] 239 / 7e-82 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10024139 [exp] 218 / 1e-73 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10008659 [exp] 62 / 7e-13 ND 44 / 4e-06 Lus10026165 [exp] 62 / 9e-13 AT3G56710 44 / 3e-06 sigma factor binding protein 1 (.1) Lus10005523 [exp] 45 / 5e-06 ND 46 / 2e-06 Lus10006569 [exp] 43 / 3e-05 ND 44 / 1e-05 Lus10038985 [exp] 41 / 0.0001 AT3G56710 54 / 3e-09 sigma factor binding protein 1 (.1) Lus10027279 [exp] 40 / 0.0002 AT3G56710 46 / 2e-06 sigma factor binding protein 1 (.1) Lus10022005 [exp] 39 / 0.0004 AT3G56710 48 / 1e-07 sigma factor binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194700 [exp] 75 / 8e-18 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.001G029700 [exp] 66 / 3e-14 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.006G038900 [exp] 49 / 1e-07 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G036600 [exp] 45 / 2e-06 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1) Potri.013G043800 [exp] 43 / 1e-05 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013750 [exp] 43 / 1e-05 AT3G56710 46 / 7e-07 sigma factor binding protein 1 (.1) Potri.019G013300 [exp] 42 / 1e-05 AT2G41180 47 / 3e-07 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G093900 [exp] 43 / 2e-05 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10039494 pacid=23165268 polypeptide=Lus10039494 locus=Lus10039494.g ID=Lus10039494.BGIv1.0 annot-version=v1.0 ATGGATTACGGACTTGGTGTTAATATGAAGAGCAGGTCTAGCAGCTACAGCAAGAAGAAGAGCAACAAGGACGTCAAAGTCGTGTACATCTCAACTCCGA TGAAGGTGAAGACGAGCGCAGCTGAATTCAGAGCTCTGGTCCAGGAGCTCACCGGCAAGGACTCCGATACCGCCAGGCTCATGGAGGTCAAAGGCAATGA GGAGTTAATGATGATGAAGAAGAAGAAGAATACGGAAACTACAGGGACGAGGGCAGGTAATGAGTCATTGACGTCGTCGTATGATCGTGACCATCATCAT CAGTCGTCGCCGTTCATTCACCAGCAGCAAGAGTACTCCTCCACGTGTTCGGATTATTCGGCTTCTACGGCGTCGTTGGATGAGCAGGAAGCGTTGTTGT TGCCGATGGAGGGTAGCTTCATGAGCTTGTTTCAGCCCAGTTTTTTGACTGAATTCAAATTCAACGAGCTAGATGAGTTGAACTATTGA
AA sequence Show only first row Show all	>Lus10039494 pacid=23165268 polypeptide=Lus10039494 locus=Lus10039494.g ID=Lus10039494.BGIv1.0 annot-version=v1.0 MDYGLGVNMKSRSSSYSKKKSNKDVKVVYISTPMKVKTSAAEFRALVQELTGKDSDTARLMEVKGNEELMMMKKKKNTETTGTRAGNESLTSSYDRDHHH QSSPFIHQQQEYSSTCSDYSASTASLDEQEALLLPMEGSFMSLFQPSFLTEFKFNELDELNY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	1.4	0.8662
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	2.4	0.8800
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	2.4	0.8624
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	4.2	0.8174
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	4.5	0.8157
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	8.0	0.8589
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	8.4	0.8407
					Lus10000811 [exp]	8.8	0.8113
AT1G32920			unknown protein		Lus10001526 [exp]	9.2	0.8301
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	9.2	0.8057

Compare expression of checked genes

Lus10039494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.