Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21960 39 / 0.0004 Receptor-like protein kinase-related family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024141 [exp] 219 / 1e-74 ND / Lus10041665 [exp] 40 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10039496 pacid=23164985 polypeptide=Lus10039496 locus=Lus10039496.g ID=Lus10039496.BGIv1.0 annot-version=v1.0 ATGGCGATTCTGTCGTCAGTAATAAGAAAATTGTTACCTTCAGTCTTCACAGCTTATTTCCTTCTAACATTGGTTAGTACCGTAGCCTCCTTGCAGACAA TGTGCCACCAAGACTCTGAGTCATACCAAGCTGGTGATTTCCGCATAGAGTGCATGCAAGATTTCCTGGGCCGGCTAGCTGTGGATTACAATCTCCCATC TTCATCCTGCGACTACAACACAACCTATGACTGCAAGGGCAGCACGACTCCGCTGTACGGCTACATATGGGCGGCTGGTTGTGGCGATAGATTATCGGAT TCGGTTTCGTGCCTGCGTACAGCTGCAGCAATGGTATACTATGGTTGCCCCAACAGCGTTGGCGGCAGGGCGTGGATCACCAATGGTGACCACTGTCTCG TTCGGGTGGAGAACTATCCGTTTTATGCGAATTCAACTGCTTCATCCACAAATACTACGTTCTGA
AA sequence Show only first row Show all	>Lus10039496 pacid=23164985 polypeptide=Lus10039496 locus=Lus10039496.g ID=Lus10039496.BGIv1.0 annot-version=v1.0 MAILSSVIRKLLPSVFTAYFLLTLVSTVASLQTMCHQDSESYQAGDFRIECMQDFLGRLAVDYNLPSSSCDYNTTYDCKGSTTPLYGYIWAAGCGDRLSD SVSCLRTAAAMVYYGCPNSVGGRAWITNGDHCLVRVENYPFYANSTASSTNTTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039496 [exp]	0	1
					Lus10009927 [exp]	1.0	0.9908
					Lus10018837 [exp]	1.7	0.9887
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	2.0	0.9854
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	2.2	0.9844
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	2.4	0.9894
					Lus10003893 [exp]	3.3	0.9691
					Lus10034352 [exp]	3.5	0.9830
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	3.6	0.9618
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	3.9	0.9570
AT2G24960			unknown protein		Lus10042421 [exp]	4.6	0.9828

Compare expression of checked genes

Lus10039496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.