Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55010 486 / 8e-174 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040931 [exp] 537 / 0 AT3G55010 532 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10009823 [exp] 535 / 0 AT3G55010 522 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10024142 [exp] 460 / 7e-161 AT3G55010 439 / 3e-151 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198600 [exp] 516 / 0 AT3G55010 526 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Potri.014G123000 [exp] 513 / 0 AT3G55010 520 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039497 pacid=23165303 polypeptide=Lus10039497 locus=Lus10039497.g ID=Lus10039497.BGIv1.0 annot-version=v1.0 ATGGCTCCTGGAATTGGAGGTTTTGGCGGTCTTTTCCCCCTTGGGGATTCATATCTCGTTGCTGGTACAGATGGTGTGGGTACCAAACTGAAACTTGCAT TTGAGACAGGAATCCATGACACTATTGGGGTTGATTTGGTTGCGATGAGTGTCAATGACATAGTTACTTCAGGTGCAAAGCCACTCTTCTTTCTTGATTA CTTTGCAACTAGCCGCCTTGATGTTGACCTGGCCGAAAAGGTTATTAGAGGCATTGTAGATGGCTGCCAGCAATCTGATTGCACACTTTTGGGAGGAGAG ACTGCAGAGATGCCAGATTTCTACGCTGATGGCGAATATGATCTCAGTGGATTTGCAGTCGGCATTGTGAAAAACGACTCGGTTATTGATGGGAAGAACA TTGTTGCAGGGGATGTTTTGATTGGGTTACCATCCAGCGGAGTTCATTCTAATGGATTTTCTCTTGTGAGAAGGGTTTTGGCCAAGAGTGGCCTTTCTCT GAAGGACCAGCTTCCTGGAAACAACCTCACATTAGGCGAGGCTCTAATTGCACCTACTGTTATATATGTGAAGCAGGTGCTTGACATAATCAGCAAGGGA GGGGTAAAGGGCATAGCCCACATTACAGGAGGTGGTTTTACAGATAACATACCCAGAGTATTCCCAAAGGGGCTTGGAGCTGCTATTTACAACAACTCGT GGGAAATTCCACCTGTCTTTAAATGGATCCAAGAGGCGGGAAACATAGAGGATGCAGAGATGAGACGAACCTTCAACATGGGAATTGGGATGGTTGTAGT GGTGACAAAGGAAGCAGCTAGAAGAATAATCGAGGATGGACAACACAAGGCGTATCAGATTGGGGAGGTTGTTGGTGCTGAAGGAGTGAGCTATCTATAA
AA sequence Show only first row Show all	>Lus10039497 pacid=23165303 polypeptide=Lus10039497 locus=Lus10039497.g ID=Lus10039497.BGIv1.0 annot-version=v1.0 MAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGVDLVAMSVNDIVTSGAKPLFFLDYFATSRLDVDLAEKVIRGIVDGCQQSDCTLLGGE TAEMPDFYADGEYDLSGFAVGIVKNDSVIDGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAKSGLSLKDQLPGNNLTLGEALIAPTVIYVKQVLDIISKG GVKGIAHITGGGFTDNIPRVFPKGLGAAIYNNSWEIPPVFKWIQEAGNIEDAEMRRTFNMGIGMVVVVTKEAARRIIEDGQHKAYQIGEVVGAEGVSYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	0	1
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	5.7	0.9463
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	6.1	0.9484
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	7.5	0.9255
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10031040 [exp]	7.7	0.9093
AT5G57280		RID2	root initiation defective 2, S...		Lus10007484 [exp]	8.1	0.9217
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	9.4	0.9233
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	9.8	0.9376
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	9.9	0.9391
AT5G19300			unknown protein		Lus10034063 [exp]	11.2	0.9181
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	11.5	0.9217

Compare expression of checked genes

Lus10039497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.