Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 386 / 2e-130 ARM repeat superfamily protein (.1) AT2G23140 130 / 2e-31 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54390 121 / 2e-30 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G71020 119 / 2e-28 ARM repeat superfamily protein (.1.2) AT5G67340 120 / 4e-28 ARM repeat superfamily protein (.1) AT1G23030 118 / 1e-27 PUB11 ARM repeat superfamily protein (.1) AT3G54850 115 / 1e-26 ATPUB14 plant U-box 14 (.1) AT1G29340 105 / 3e-23 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 104 / 4e-23 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54790 97 / 1e-20 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024145 [exp] 585 / 0 AT1G08315 390 / 2e-136 ARM repeat superfamily protein (.1) Lus10008655 [exp] 508 / 2e-178 AT1G08315 393 / 5e-138 ARM repeat superfamily protein (.1) Lus10024143 [exp] 233 / 5e-70 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10026170 [exp] 171 / 2e-50 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10033196 [exp] 169 / 6e-48 ND / Lus10002100 [exp] 160 / 4e-44 ND / Lus10006007 [exp] 147 / 3e-41 AT1G08315 111 / 8e-30 ARM repeat superfamily protein (.1) Lus10005728 [exp] 144 / 3e-37 AT2G01080 213 / 4e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10017444 [exp] 133 / 2e-32 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028300 [exp] 440 / 1e-151 AT1G08315 343 / 3e-118 ARM repeat superfamily protein (.1) Potri.003G195400 [exp] 431 / 3e-148 AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 136 / 1e-33 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G028400 [exp] 126 / 1e-31 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.010G226500 [exp] 127 / 9e-31 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G185900 [exp] 124 / 1e-29 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G144700 [exp] 123 / 5e-29 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.008G071600 [exp] 122 / 6e-29 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G051000 [exp] 122 / 7e-29 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.001G238500 [exp] 122 / 9e-29 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10039500 pacid=23164987 polypeptide=Lus10039500 locus=Lus10039500.g ID=Lus10039500.BGIv1.0 annot-version=v1.0 ATGGAGGTGAAGCGAAGAAGCATACGCACGCTAGTCACAAAGCTCAGCTCGGTTTCGGAGCGGACACGAGAGGAGTCATTAGCAGAGCTCCGACTCATCA CCAAGCACGACGAAGAAAGCCGCCCGATCATCGCCGAAGCAGGGGCCATCCCTTACTTGGCAGAGACTCTCTACTCCTCTTCCCACGAATCTCAGGAAAA CGCCGCCGCTACTCTCCTCAACATCTCAATTTCCTCTCGCGACTCTCTCATGTCCACCCGCGGCTTACTCGACGCGCTATCCCACGCGCTCCGCCACCAC TCCACCACCACTCCCCCGACCGCGGTGCAGTCTGCCGCCGCCACGCTGCACAGCCTGCTGGTAATCGACTCCTACCGCCCGATCATCGGATCGAAGAGGG ACATCCTGTACTCGCTGATTGAGATCGTGCAGAGCCCCAAATCGCCTCCACGGTCGATCAAGGACGCGCTGAAGGCCATGTTCGGGATCGCTCTGTACCA GCTGAACCGGTCCACAATGATCGATCTGGGAGCAGTTCCGCCGCTGTTCTCGCTGGTGGTCAAGGACGGGAGGGTGGGGATCGTGGAGGACGCGACGGCG GTGATCGCTCAGATCGCCGGATGCGAGGAGAGCGAGGCGGAATTCGGGAGGGTGTCTGGAATTAGGGTATTGGTGGATCTGTTAGACGTGGGGACTGGAT CGAGCGATAGGGTGAAGGAGAACGCGGTGGGGGCGTTGCTGAATCTGGTGAGGAGTGGAGGTGAGAAAGTTGGGGGAGAGGTGAAGCAATTGGGAGCTTA CGTACTTGAAGGTATTAGACAAGTTAAGGAGAGAGGGAGCTCGAAAGGGAAGAGTAAAGCCATGGATTTGCTAGAATTGATCGAAGGAGGATCTATGAAT GGCAACATTTTTGGACTAATATACGTGGACCCCGATCTGCACTCTGCTGGGAGAGAGCTAACGGTTGATGAGATTTTTGCTAGCCAGCCTCCGGATTTGG GCGATGACATCCATACCATTCGGGATGACTCCGACGGCGATGATGAGCAGATCCCGTTGGACGGTGACGGAGATGAGGATGACGATAGTGATGCCTCGTT TCACCCTTTCTTGCTGGATAGTGCACGCTCGTGGAAGAGACCTGCATGGAGAGGTACAACCGCTCCATCTGGATCTGGAGCGGGTACTAGGTCATCTCGT GGGTCGCAGGGCCCGTCTACTGTGGGCCTTAGATGTGGTAGAGGAGCGCGTTCTGCTGGGGTCCAATCTAGCAGAACCGGCAGGGAGTGGTTGCTTACTA GTCCGGCTACTGGTGGACCCTGGATCCCTACTGTGATCCCTAGTTTTGGCGGTCACATAGCCCACCCCCCCTGGGCGCCCGGGTTTGGCTCTAGGCGCGA AGAAGTAAAAAGAACACCTGGTGGTGGGGGGAAGTTGTCGCCGGAGCATGTATCAGACAAGAACACCAATGCAGCGGCGGCGGTGGACGATACAGACAGC AGCACTCCAGCGCAGGTGTACAGCGAGACCAAGGAGACGAACAAGAAGTTCGGAACAACAAATCGGGTGAAGAAGATGAAGAGGAAGGGGATCAGCGGAT CGGAAAGGAGGAGATCACCATCATCATCGGAGTACTGGGAGATAGCAGAGAGCATAAGGTGGATGGCGGAGGTGGTAGTGAGGTCGGAGCAGGCAAGGAT GGAAACAATGAAGGAAGTTGAGAAGATGAGGATCGAAGCAGATGCTAAGAGAGGTGAGATTGAGTTGAAGAGAACTGAGATTTTGGCTAATACCCAGCTG GAGATCGCCAAGCTTTTTGCAGCTGGTCTGACCAAATCCGGCCGGTCGACGGTCGATTCTTCCTTACGGATTGGGAGAAATTGA
AA sequence Show only first row Show all	>Lus10039500 pacid=23164987 polypeptide=Lus10039500 locus=Lus10039500.g ID=Lus10039500.BGIv1.0 annot-version=v1.0 MEVKRRSIRTLVTKLSSVSERTREESLAELRLITKHDEESRPIIAEAGAIPYLAETLYSSSHESQENAAATLLNISISSRDSLMSTRGLLDALSHALRHH STTTPPTAVQSAAATLHSLLVIDSYRPIIGSKRDILYSLIEIVQSPKSPPRSIKDALKAMFGIALYQLNRSTMIDLGAVPPLFSLVVKDGRVGIVEDATA VIAQIAGCEESEAEFGRVSGIRVLVDLLDVGTGSSDRVKENAVGALLNLVRSGGEKVGGEVKQLGAYVLEGIRQVKERGSSKGKSKAMDLLELIEGGSMN GNIFGLIYVDPDLHSAGRELTVDEIFASQPPDLGDDIHTIRDDSDGDDEQIPLDGDGDEDDDSDASFHPFLLDSARSWKRPAWRGTTAPSGSGAGTRSSR GSQGPSTVGLRCGRGARSAGVQSSRTGREWLLTSPATGGPWIPTVIPSFGGHIAHPPWAPGFGSRREEVKRTPGGGGKLSPEHVSDKNTNAAAAVDDTDS STPAQVYSETKETNKKFGTTNRVKKMKRKGISGSERRRSPSSSEYWEIAESIRWMAEVVVRSEQARMETMKEVEKMRIEADAKRGEIELKRTEILANTQL EIAKLFAAGLTKSGRSTVDSSLRIGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	0	1
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10016546 [exp]	1.0	0.9016
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	4.7	0.8802
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	4.9	0.8663
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	6.9	0.8729
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	6.9	0.8578
AT4G16400			unknown protein		Lus10016614 [exp]	7.2	0.8445
AT5G18850			unknown protein		Lus10033997 [exp]	7.5	0.8706
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	9.7	0.8685
AT4G10810			unknown protein		Lus10023038 [exp]	10.6	0.8601
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	12.4	0.8566

Compare expression of checked genes

Lus10039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.