Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07030 462 / 4e-163 Eukaryotic aspartyl protease family protein (.1) AT3G54400 448 / 8e-158 Eukaryotic aspartyl protease family protein (.1) AT1G09750 317 / 6e-106 Eukaryotic aspartyl protease family protein (.1) AT1G01300 162 / 5e-46 Eukaryotic aspartyl protease family protein (.1) AT3G61820 160 / 2e-45 Eukaryotic aspartyl protease family protein (.1) AT3G20015 149 / 4e-41 Eukaryotic aspartyl protease family protein (.1) AT1G25510 149 / 4e-41 Eukaryotic aspartyl protease family protein (.1) AT3G18490 146 / 8e-40 Eukaryotic aspartyl protease family protein (.1) AT1G79720 144 / 3e-39 Eukaryotic aspartyl protease family protein (.1) AT5G10770 143 / 5e-39 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024148 [exp] 615 / 0 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1) Lus10008654 [exp] 484 / 5e-172 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026171 [exp] 445 / 5e-157 AT5G07030 494 / 4e-174 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 169 / 2e-48 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 148 / 1e-40 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 139 / 4e-37 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 139 / 1e-36 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 138 / 2e-36 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 132 / 4e-35 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028200 [exp] 511 / 0 AT3G54400 542 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 504 / 1e-179 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 360 / 7e-123 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 163 / 3e-46 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 162 / 4e-46 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 157 / 7e-44 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 155 / 2e-43 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 154 / 9e-43 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 145 / 1e-39 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 141 / 1e-37 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10039503 pacid=23165086 polypeptide=Lus10039503 locus=Lus10039503.g ID=Lus10039503.BGIv1.0 annot-version=v1.0 ATGATGATGGCACTTGATACCAGCAGTGATGCTGCTTGGATCCCTTGCAATGGCTGTGTTGGTTGTTCTTCCTCTGTTTTCAACTCTCTCAAGTCCACTT CTTTCAAATCCCTTGGCTGCCGCTCCTCTCAATGCCACCAGGTACCCAACCCCACCTGTGGAGGCAGCGCGTGTGTCTTCAACATGACTTACGGCAGCTC TTCCATCGCAGCAAATCTGTCCTCCGACACTTTCAAACTCGCCGCCGACCCCATCCCAGCCTACACATTCGGCTGCATCCAGAAGGCCACCGGCAGCTCT GTCCCGCCGCAGGGGCTCTTGGGCTTGGGCCGAGGCCCTCTATCGTTCCTCTCCCAAACCCAAAACCTTTACAAATCCACTTTCTCCTATTGCCTACCCA GCTTCAAGTCACTCAACTTCTCCGGATCGTTGAAGCTCGGCCCTGTAGCCCAGCCCATCAGGATCAAGTACACGCCATTGCTCAAGAATCCCAGGAGATC ATCTCTGTACTATGTGAATCTCATCGCCATTAAGGTTGGCCGCAAAATTGTTGACATCCCCGCCGGTTCTTTGGCCTTCAACCCCACCACCGGCGCCGGC ACAATCATAGATTCCGGCACGGTGTTCACCAGGCTTGTGACGCCGGTGTACACGGCGGTAAGGGACGAGTTCCGGAGGCGCGTGGGAAGGAAGGTGACGG TGACATCCCTAGGTGGGTTCGACACGTGCTACTCAAACGCCATTGTGCCACCCACCATCACGTTCATGTTCGCAGGGATGAACGTGACGCTGCCGGCGGA TAACACCATGATTCACAGCACTGCTGGGAGCACGGCGTGCCTGGCAATGGCGGCTGCCCCGGACAACGTGAAGTCGGTGGTCAACGTCATCGCCAACATG CAGCAGCAGAACCACAGGATCCTGATCGACGTGCCAAACTCGAGGATCGGGGTGGCGCGTGAGCAATGCTCGTGA
AA sequence Show only first row Show all	>Lus10039503 pacid=23165086 polypeptide=Lus10039503 locus=Lus10039503.g ID=Lus10039503.BGIv1.0 annot-version=v1.0 MMMALDTSSDAAWIPCNGCVGCSSSVFNSLKSTSFKSLGCRSSQCHQVPNPTCGGSACVFNMTYGSSSIAANLSSDTFKLAADPIPAYTFGCIQKATGSS VPPQGLLGLGRGPLSFLSQTQNLYKSTFSYCLPSFKSLNFSGSLKLGPVAQPIRIKYTPLLKNPRRSSLYYVNLIAIKVGRKIVDIPAGSLAFNPTTGAG TIIDSGTVFTRLVTPVYTAVRDEFRRRVGRKVTVTSLGGFDTCYSNAIVPPTITFMFAGMNVTLPADNTMIHSTAGSTACLAMAAAPDNVKSVVNVIANM QQQNHRILIDVPNSRIGVAREQCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	0	1
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10024269 [exp]	2.4	0.8289
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	3.2	0.7948
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	5.5	0.8198
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	6.2	0.7741
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	9.4	0.8024
					Lus10013458 [exp]	9.5	0.7597
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	10.8	0.8112
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	13.8	0.7907
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	14.5	0.7947
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	16.1	0.7670

Compare expression of checked genes

Lus10039503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.