Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27890 256 / 8e-88 NQR NADPH:quinone oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039506 [exp] 328 / 3e-116 AT3G27890 247 / 4e-84 NADPH:quinone oxidoreductase (.1) Lus10026172 [exp] 303 / 5e-106 AT3G27890 267 / 5e-92 NADPH:quinone oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028000 [exp] 273 / 2e-94 AT3G27890 306 / 1e-107 NADPH:quinone oxidoreductase (.1) Potri.003G195700 [exp] 263 / 1e-90 AT3G27890 296 / 1e-103 NADPH:quinone oxidoreductase (.1) Potri.003G195900 [exp] 229 / 4e-77 AT3G27890 258 / 3e-88 NADPH:quinone oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10039505 pacid=23165212 polypeptide=Lus10039505 locus=Lus10039505.g ID=Lus10039505.BGIv1.0 annot-version=v1.0 ATGGAGGCAGCTGCAGTTCCGATGATCAGAATCGCAGCTATCAGTGGGTCCATTCGTCAAGGCTCCTTCAACTCCGGCCTCATCCGTTCTGCAATTGAGT TGAGCAAGCAGCAGAAGGTGAGCGGAATAGAAATCGAGTTCGTGGACATTACGCCGCTGCCGATGTTGAACACCGACCTCGAAGGTCCCGGCGGCAGTTT CCCTCACGCCGTTGAGGCTTTCCGACAGAAAATTCGGGAAGCCGACGGATTCCTCTTCGCGTCTCCCGAATATAATTACTCTGTTTCCGCACCGCTGAAG AATGCGTTGGATTGGGCATCGAGGCCACCAAACTGCTGGGGGAACAAGGCTGCAGCCATAGTGAGCGCCGGAGGAGGATTCGGCGGCGGAAGATCGCATT ACCATCTTCGGCAAATAGGGGTTTACCTAGACATTCATTTCATCAATAAACCAGAGTTCTTCCTCAACGCATTTGCTTCTCCTGCCAAATTCGACAGTGA TGGCAACTTGATTGATGATGAGGCCAGAGAGAATCTGAAACATGTGCTGGTCAGCCTTGGCAATCACGCTCTTCGCCTCAAGGCCGCCATCTAA
AA sequence Show only first row Show all	>Lus10039505 pacid=23165212 polypeptide=Lus10039505 locus=Lus10039505.g ID=Lus10039505.BGIv1.0 annot-version=v1.0 MEAAAVPMIRIAAISGSIRQGSFNSGLIRSAIELSKQQKVSGIEIEFVDITPLPMLNTDLEGPGGSFPHAVEAFRQKIREADGFLFASPEYNYSVSAPLK NALDWASRPPNCWGNKAAAIVSAGGGFGGGRSHYHLRQIGVYLDIHFINKPEFFLNAFASPAKFDSDGNLIDDEARENLKHVLVSLGNHALRLKAAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	0	1
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	2.4	0.9618
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	3.5	0.9361
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	8.4	0.9328
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	9.0	0.9392
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	10.4	0.9191
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	10.4	0.9121
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	11.2	0.9167
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10036367 [exp]	11.6	0.8663
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	13.3	0.9393
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	14.1	0.9291

Compare expression of checked genes

Lus10039505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.