Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27890 228 / 1e-76 NQR NADPH:quinone oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039505 [exp] 310 / 1e-108 AT3G27890 257 / 3e-88 NADPH:quinone oxidoreductase (.1) Lus10026172 [exp] 265 / 6e-91 AT3G27890 267 / 5e-92 NADPH:quinone oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028000 [exp] 243 / 2e-82 AT3G27890 306 / 1e-107 NADPH:quinone oxidoreductase (.1) Potri.003G195700 [exp] 242 / 5e-82 AT3G27890 296 / 1e-103 NADPH:quinone oxidoreductase (.1) Potri.003G195900 [exp] 223 / 2e-74 AT3G27890 258 / 3e-88 NADPH:quinone oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10039506 pacid=23165332 polypeptide=Lus10039506 locus=Lus10039506.g ID=Lus10039506.BGIv1.0 annot-version=v1.0 ATGGAGGCAGCTGCAGTTCCGCCGACGATCAGAATCGCTGCTCTTAGTGGGTCCCTCCGTCAGGGCTCCTTCAATTCCGGCCTCATCCTTTCTGCAATTG AGTTGATCAAGCAGCAGAAGGTGAGCGGAATAGAGATCGAATTCCTGGACATAACGCAGCTGCCGATGTTAAACACCGACCTCGAAGGACCCGACGGCAG TTACCCTGACGCCGTTGAGACTCTCCGCCGGAAAATTCGGGAAGCCGACGGATTCCTCTTTGCGTCTCCCGAATATAATTACTCTGTTTCCGCACCGCTG AAGAATGCGTTGGATTGGGCATCGAGGCCACCGAACTGCTGGGGGAATAAAGCTGCAGCCATAGTAAGCGCCGGAGCAGGAGGGTGCGGCGGCGGAAGAG CACAATACCATCTTCGGCAGATAGGGGTTTACATAGACATTCATTTCATCAACAAACCAGAGTTCTTCCTCAACGCGTTTGCTCCTCCTGCGAAATTCGA CAGCGATGGCAACTTGATTGACGATCAGGCCAAAGAGAATATGAAAAATGTTCTGGTTAGCCTTCGCAATCATGCTCTTCGCCTCAAGGCCGCCAACTGA
AA sequence Show only first row Show all	>Lus10039506 pacid=23165332 polypeptide=Lus10039506 locus=Lus10039506.g ID=Lus10039506.BGIv1.0 annot-version=v1.0 MEAAAVPPTIRIAALSGSLRQGSFNSGLILSAIELIKQQKVSGIEIEFLDITQLPMLNTDLEGPDGSYPDAVETLRRKIREADGFLFASPEYNYSVSAPL KNALDWASRPPNCWGNKAAAIVSAGAGGCGGGRAQYHLRQIGVYIDIHFINKPEFFLNAFAPPAKFDSDGNLIDDQAKENMKNVLVSLRNHALRLKAAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	0	1
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	2.4	0.8296
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	2.6	0.8452
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	2.8	0.8119
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	3.2	0.7899
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	7.5	0.7944
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	9.2	0.8128
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Lus10002674 [exp]	11.5	0.7965
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	12.8	0.7986
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	13.1	0.7914
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	14.0	0.7367

Compare expression of checked genes

Lus10039506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.