Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 910 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 878 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 868 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 671 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 654 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G26420 626 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G10900 441 / 1e-144 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 406 / 2e-130 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 384 / 9e-123 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G01460 236 / 2e-70 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024151 [exp] 1359 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 1142 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 1130 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 882 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 873 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 854 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 851 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10029661 [exp] 647 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 531 / 5e-179 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027900 [exp] 1001 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 1001 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 901 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 658 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 656 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 645 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 637 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 434 / 8e-142 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 417 / 1e-134 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.003G019100 [exp] 374 / 9e-119 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10039507 pacid=23165266 polypeptide=Lus10039507 locus=Lus10039507.g ID=Lus10039507.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAGTACAAAGGCATTGCAAAGGTCTGGGAAGCTACCATAAGAAAATCACAAGGTTTAATTTCAAAGAAACGAACCCACAACATTTTCGGGA CCATGATCTCTGCAGCTGTAGCTCACGCGGACGACGACGATCCTTCAACTCACCAGCGCAAGGAAATCGTTCTCCCCAACGGCGACTTCTACACGGGCCA GTGGCTCGACGGGTTCCCTCACGGTCACGGCAAGTACATCTGGACCGACGGATGTGTCTACCTTGGGGATTGGCAAAGGGGGAAGAAGACAGGGAAAGGG AAGTTCAGCTGGCCGTCCGGTGCTACGTACGAGGGAGATTTCAAGGCTGGATATATGGACGGGAAAGGAAATTACACGGCCACCTCTGGGGACACCTATA AAGGTTCGTGGGTTATGAATTTGAAACATGGGCCAGGGATTCAGAGCTATCATGTTGTTGGGGATTCGTATGATGGTGAGTGGAAGAAAGGTGTGCAGGA TGGACAGGGCAAGTACCAATGGAAGAATGGGAGTAGCTATGTTGGTCAGTGGAGAGGAGGAGTTATGAATGGCAATGGAGTCATTAACTTCGGGAATGGG AATAGTTATGATGGGAATTGGGAAGATGGATTGCCTAGTTTGGATGAAGAACGTCAGCTGTTCTCTGGTGAGTTGGCAGGGTGTAAAGTTTCTGTTTCGG AGGGTATTTATATTTATCCGTCACAAAAGACTTGTTATGTGGCCGGTTCTGATCGAGGATCGGTTGATGGGAGGTTAAGTAATTATAGCATGAGTTCTTG GGAAGGAAGTGACTATGGTGTTGGTGGATTTGATGGAGATGGCGACGAACATCACTTGAGTGAGAGCTTGAATAAGTTGAGACTACAGACAACCAAGAAA CAAGGAGAGACAATATCCAAAGGGCACAAGAATTATGAGCTTATGCTCAATCTCCAGTTGGGAATCAGACATTCAGTAGGGAGGCCCGGTCCTCAAATAT CTCTTGACCTTAAGTCTTCAGCATTCGACCCAAGAGAGAAAGTATGGACTAAATTTCCACCAGAAGGATCAAAATACACTCCACCTCACCAATCTTCTGA TTTCAGATGGAAGGATTATTGCCCTTTAGTGTTCAGGACTCTCAGGAAATTGTTCAATGTTGATGCAGCTGATTACATGTTGTCTATATGTGGGAATGAT GCTCTCAGGGAGCTGTGTTCTCCTGGGAAAAGTGGAAGCTTTTTTTACTTGACTAGTGATGATCGTTACATGATCAAGACAATGAAGAAGGCCGAAGTTA AAGTGCTCATAAGGATGTTGCCCGCCTACTATAAGCATGTTCGACAATTCGAGAATACTCTTGTCACCAAATATTTTGGCCTTCATTGCGTGAGGTTAGC CGGCCCGAACCAGAAAAAGGTGCGCTTCATTATAATGGGAAATCTGTTCAACACTATGTATACGATTCATAGGCGCTTTGACTTGAAAGGTTCTTCTCAT GGTCGTATTACTTGTAAACCCGAATCGGAAATCGATGCTTCCACGACTCTCAAGGACCTTGACCTCAACTATTTATTCCGGTTGCAGAGAGTGTGGTACC AAGAGTTCTGCAGGCAAATAGACAGAGACTGTGAACTCCTTGAGCAAGAAAGGGTAATGGACTACAGTCTTTTAGTTGGCATTCACTTTAGAGAGGCTTC ATACAGAGATGTTTTGACACCTCCAAGGACATCCGGAGTTCGTACCCCTACCGGCCTCCGTACCTCCTCAGGAAATCAAACTCCTACACGAAACGGAGAC GGTGATGGCGATTCTACTGGAGCTCCAAGACTTTCTCGAGCAGAGATGGATAAACTTGTCCTTGATCCCTCCAGGTGGCCTTCCATCAAACTAGGAATGA ACATGCCGGCAAGAGTGGAAAAGACAGTAAGAAAGAACGATGGAGAGACGCAGCTAGTGGGAGAGCCAACGGGGGAACTATACGAAGTCATCCTGACATT TGGAATCATAGACATACTACAAGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAATCAATGCATTACGATCCAACATCAATCTCAGCCGTGGAT CCAAAGCAGTACTCAAGGAGATTCAGGAACTTCATCTTCAAAGTTTTCGTAGAAGAAAGTTGA
AA sequence Show only first row Show all	>Lus10039507 pacid=23165266 polypeptide=Lus10039507 locus=Lus10039507.g ID=Lus10039507.BGIv1.0 annot-version=v1.0 MSKEYKGIAKVWEATIRKSQGLISKKRTHNIFGTMISAAVAHADDDDPSTHQRKEIVLPNGDFYTGQWLDGFPHGHGKYIWTDGCVYLGDWQRGKKTGKG KFSWPSGATYEGDFKAGYMDGKGNYTATSGDTYKGSWVMNLKHGPGIQSYHVVGDSYDGEWKKGVQDGQGKYQWKNGSSYVGQWRGGVMNGNGVINFGNG NSYDGNWEDGLPSLDEERQLFSGELAGCKVSVSEGIYIYPSQKTCYVAGSDRGSVDGRLSNYSMSSWEGSDYGVGGFDGDGDEHHLSESLNKLRLQTTKK QGETISKGHKNYELMLNLQLGIRHSVGRPGPQISLDLKSSAFDPREKVWTKFPPEGSKYTPPHQSSDFRWKDYCPLVFRTLRKLFNVDAADYMLSICGND ALRELCSPGKSGSFFYLTSDDRYMIKTMKKAEVKVLIRMLPAYYKHVRQFENTLVTKYFGLHCVRLAGPNQKKVRFIIMGNLFNTMYTIHRRFDLKGSSH GRITCKPESEIDASTTLKDLDLNYLFRLQRVWYQEFCRQIDRDCELLEQERVMDYSLLVGIHFREASYRDVLTPPRTSGVRTPTGLRTSSGNQTPTRNGD GDGDSTGAPRLSRAEMDKLVLDPSRWPSIKLGMNMPARVEKTVRKNDGETQLVGEPTGELYEVILTFGIIDILQDYDISKKLEHAYKSMHYDPTSISAVD PKQYSRRFRNFIFKVFVEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	0	1
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	5.5	0.8455
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	5.5	0.8595
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	6.0	0.8577
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	11.0	0.8770
					Lus10012132 [exp]	11.5	0.8540
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	14.2	0.8536
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	16.0	0.7942
					Lus10010271 [exp]	19.1	0.8344
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	29.5	0.7966
					Lus10000890 [exp]	30.0	0.7872

Compare expression of checked genes

Lus10039507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.