Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039510 pacid=23165117 polypeptide=Lus10039510 locus=Lus10039510.g ID=Lus10039510.BGIv1.0 annot-version=v1.0 ATGGCGGTTGACTTGTGTTTAACCGTTGTTCAGTCTTGTAATAAAGGTTCAGGTGTACATGAAGTAAATGTAACAGTCATTTGTTACCGAGTTGCATGGG ATCAGTTATCATCATTGTTTATGGGAAGAGTGGCAGGCATTTTGAATTGGAAACTGAAGCATGGGAGAATTTCTTCGGGGCATAGCATAGAGAGGGCAAA CTTGTTAGCAGCAAAAGTGCGAAAAGTGAAGTTGGGTTTTGCTAAAGATATTGTCATGGAGATTGTGACTGCAACAATGCTGTACACAAAGAGAAACAGT AGGGTTCCGTTGAAATCGAGACTACAACGGATGAGATGA
AA sequence Show only first row Show all	>Lus10039510 pacid=23165117 polypeptide=Lus10039510 locus=Lus10039510.g ID=Lus10039510.BGIv1.0 annot-version=v1.0 MAVDLCLTVVQSCNKGSGVHEVNVTVICYRVAWDQLSSLFMGRVAGILNWKLKHGRISSGHSIERANLLAAKVRKVKLGFAKDIVMEIVTATMLYTKRNS RVPLKSRLQRMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039510 [exp]	0	1
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	7.7	0.6427
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	20.5	0.6348
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	23.3	0.6258
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	27.8	0.6311
AT1G78810			unknown protein		Lus10028833 [exp]	29.7	0.5827
					Lus10009611 [exp]	34.2	0.5877
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	62.7	0.5583
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	70.3	0.5861
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	73.7	0.5773
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	76.7	0.5560

Compare expression of checked genes

Lus10039510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.