Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 345 / 3e-104 disease resistance family protein / LRR family protein (.1) AT5G27060 256 / 2e-71 AtRLP53 receptor like protein 53 (.1) AT4G13920 247 / 8e-69 AtRLP50 receptor like protein 50 (.1) AT4G20140 250 / 9e-69 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 244 / 2e-67 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 243 / 2e-67 AtRLP34 receptor like protein 34 (.1) AT3G05660 231 / 2e-63 AtRLP33 receptor like protein 33 (.1) AT1G45616 230 / 1e-62 AtRLP6 receptor like protein 6 (.1) AT2G33050 224 / 2e-61 AtRLP26 receptor like protein 26 (.1) AT2G32680 225 / 3e-61 AtRLP23 receptor like protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002742 [exp] 921 / 0 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10039531 [exp] 684 / 0 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 661 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 656 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 650 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 641 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10039514 [exp] 634 / 0 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 634 / 0 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 634 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 492 / 7e-158 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 488 / 1e-155 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 478 / 4e-153 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 462 / 1e-152 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 474 / 1e-151 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 464 / 3e-146 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 456 / 5e-144 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 454 / 7e-144 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 448 / 4e-142 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 443 / 5e-140 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039512 pacid=23165393 polypeptide=Lus10039512 locus=Lus10039512.g ID=Lus10039512.BGIv1.0 annot-version=v1.0 ATGATCATCCTTCCATTCAGCAATGGATCGCTGTCAAATCTCACAGCCTCCTGCCGACCTACACAGAGGAAAGCTCTTCTTCAGTTCAAGCAACACCTCA TTGACGTCTCGGATCGCCTCGTCTCTTGGTCAGCTGATAACGGAGACTGCTGCAAAACATGGTCAGGAGTTGTCTGTGACAATGTTTCTGGGAATGTACT TGAGCTTCATCTTGGTGGCGGCATTACTGAAGCTGTATTTAGCGGCAGAATCGATCCTTCTCTGGCTACATTGGAGCAGCTCACGTTGTTGGATCTTAGT GGCAACGCATTCGCAGGAATTCCTATTCCCAATTTCCTCGGCTTCATGAAGAATTTGAGGGTTCTCAACATTTCCTGGGCAGGATTCGGAGGAAGCATTA CTTCTGTTGATCAACTTCAAAACCTGTCAAACCTCAGGATCCTGGATCTCCGATATAACAACTTTCAAGTCCTGAGTCTAGATTGGATTTCTAGTCTCAC TTCCTTGGAGATTTTACGCCTCGATTTCCTGGACCTCGGTAAGGTTTCGAACTCTTGGCTACATGTCATAAGTAAGCTTCCTTCGGTCATAGAGTTGTGC CTCTCCAATTGCGGAATTGTTCAGGTTCCGGTGCTCAGGGGCCATGTCAATTTCTCGTCTTCAATGACTTTTCTCGATTTGTCTTACAACAATTTCTCTG GCCAACCTTCATTCCCAGATTGGGTTCTTGACCTGAAGTCCTTGACTCACCTTAATCTCGCAAACAACCGGTTTTCTGGCCCGATCCCCGAAGGTCTTCA GAATCTGATCTTACTTGAAACACTTGACCTGTCCGGGAATTCGTTCACTTTGTTGAAACCAAGCTCCTTGTCTTCCTTGTCCCGGCTTCGTGTCCTCAAC CTTGCTTCGAATAACCTTGTAGGTGACCTTTCCGGAGCCATGGAAAACATGACTTCCCTTGTTGAACTTGATTTCTCATCAAATGGGCTTCAATTCAATG GCGGAATCCCCAAGTATTTCAGGAAATTTTGCAACCTGAAATTGCTCACTCTATCTGATGTCAAACTAAGGCAAGAAGCGAACCAGGCTTTTGATGTGTT GTCTGGATGCCCTGCAGCTGGGTTGACGTCCATCAGGATGGCCAATTGTCAACTATTTGGTTCATTGAACATTTCGCTTTCGAAATTTAAGAACCTGGAT ACACTTTCCTTGTACAGAAATTCAATTTCAGGTCCATTTCCAAAGTCCTTCACAGACTTGGCATCCTTAAGGTCCCTACAGGTTTACAACAACAAATTCA GTGGAAGCCTTCCTGTACTTGGAGGTCTCACAAACCTCGAATCGATCGACATCTCTTACAACTTATTAGAAGGTGATGTCTATGAGATTCACTTTGCAAA CCTTACGCAACTATGGATGCTTCGTGCATCTGGGAATCGGCTCAGATTGAGAGTTGGTCCAGATTGGGTTCCTAATCCACATTTGAATGATTTAGGACTA GGATCATGGACACTTGGACCGGAGTTCCCTCCATGGATTCGGTCCTTAAAGTTGCTCAACAGCTTAAACTTGTCCAATTCAGGAATGTCTTCCCGAATTC CATCTTGGTTCTTCTTCAACTCCGCCTTTTACAGCATTGACATGAGCTCAAATAATCTGGCTGGGCCCTTGCCTTCTATTTCCCCCATTACAAGCATTCT AGACCTTTCAAACAATAACCTCTCCGGCACCATTTCCAACTTCCTGTGCTACAAGCCGGACGAAATGAAATTGACCCAAGTCTTGAACCTTGGAGGAAAT CAGTTCCATGGTGAGATACCAAACTGTTGGGAAACTTGGATGTACTTGGAAGCTGTGAAATTGAACAACAATAAGTTCAGGGGAAGCATCCCTTGGTCTG TCGGAACATCTGTGTTTCTCAAATCGCTTCACCTTCGAAACAACTTGCTCTCAGGAGAAATTCCCTTATCATTGAACAACTGTTCCAAGCTGCTAACACT CGATTTCAGCGGAAACAAACTGGTTGGTACAATTCCTACCTGGATTGGGGATACGTTAAGAAACCTGATGATTCTCAACTTGAGGGGAAATAATTTCCAG GGAAGAATCCCAACGGAACTATGCAGGGCGAATTCCCTCCGAGTCTTGGACCTTGCAGACAATAATCTCACTGGAATTATTCCCAGATGCGTCAACAACT TCACAGCAATGGTTCGGATGAATGATTCGGGCGGAATCATTCTCTTGAGCTACAATGGGACAGGACCCTTTTTCGAAACAGCACTGATTGTGGTCAAGGG AAAGTTGTACGAATATGGGTCTATCCTGAAACTGGTGAGAAGCATCGACTTGTCAGCCAACAGATTGTTTGGACAGATTCCTCAAGAAATGAGTAGCCTT GGAGGGTTGCAATCTCTGAACCTCTCAGGAAACTTGCTGACAGGTGCAATCCCTCGGGACATTGGAGCAATGAAATCACTGGAAACGCTAGACCTTTCTG TCAATCAATTAGCAGGGGAGATTCCAGGGAGTATGTCAGGGATGACCTTTCTGAGCTTCCTGGACATTTCTGACAACAGATTGAGCGGCAGAATTCCTTC AAGCACACAGTTCCTGGGATTTAATTCCTCCAGCTTTGCCGGAAACTTGGATATCTGCGGACTACCACTTGCGAAGAATTGTAGCAAGGACATTGTTGGA CCTGGAGGTAACGTAAACAATAATTCAAGAACCAGCAAAGAGGAGGAAAGTGAGGAATTGATAGAGTTGGGGTTTTATGTGAGCATAGCAATAGGGTTCA TCGTGGGATTTTGGGGTGTGGTGTGTTCTTTAGGGCTCATCAAGAAATGGAGGTATGGCTTCTTTCGGTTTATGGACAGTATGTGGCACAAGTTTTGGTA G
AA sequence Show only first row Show all	>Lus10039512 pacid=23165393 polypeptide=Lus10039512 locus=Lus10039512.g ID=Lus10039512.BGIv1.0 annot-version=v1.0 MIILPFSNGSLSNLTASCRPTQRKALLQFKQHLIDVSDRLVSWSADNGDCCKTWSGVVCDNVSGNVLELHLGGGITEAVFSGRIDPSLATLEQLTLLDLS GNAFAGIPIPNFLGFMKNLRVLNISWAGFGGSITSVDQLQNLSNLRILDLRYNNFQVLSLDWISSLTSLEILRLDFLDLGKVSNSWLHVISKLPSVIELC LSNCGIVQVPVLRGHVNFSSSMTFLDLSYNNFSGQPSFPDWVLDLKSLTHLNLANNRFSGPIPEGLQNLILLETLDLSGNSFTLLKPSSLSSLSRLRVLN LASNNLVGDLSGAMENMTSLVELDFSSNGLQFNGGIPKYFRKFCNLKLLTLSDVKLRQEANQAFDVLSGCPAAGLTSIRMANCQLFGSLNISLSKFKNLD TLSLYRNSISGPFPKSFTDLASLRSLQVYNNKFSGSLPVLGGLTNLESIDISYNLLEGDVYEIHFANLTQLWMLRASGNRLRLRVGPDWVPNPHLNDLGL GSWTLGPEFPPWIRSLKLLNSLNLSNSGMSSRIPSWFFFNSAFYSIDMSSNNLAGPLPSISPITSILDLSNNNLSGTISNFLCYKPDEMKLTQVLNLGGN QFHGEIPNCWETWMYLEAVKLNNNKFRGSIPWSVGTSVFLKSLHLRNNLLSGEIPLSLNNCSKLLTLDFSGNKLVGTIPTWIGDTLRNLMILNLRGNNFQ GRIPTELCRANSLRVLDLADNNLTGIIPRCVNNFTAMVRMNDSGGIILLSYNGTGPFFETALIVVKGKLYEYGSILKLVRSIDLSANRLFGQIPQEMSSL GGLQSLNLSGNLLTGAIPRDIGAMKSLETLDLSVNQLAGEIPGSMSGMTFLSFLDISDNRLSGRIPSSTQFLGFNSSSFAGNLDICGLPLAKNCSKDIVG PGGNVNNNSRTSKEEESEELIELGFYVSIAIGFIVGFWGVVCSLGLIKKWRYGFFRFMDSMWHKFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	0	1
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	1.4	0.9236
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	2.4	0.9224
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	2.4	0.9180
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	6.2	0.8165
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	6.3	0.8640
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	6.6	0.8971
AT3G47570			Leucine-rich repeat protein ki...		Lus10011386 [exp]	6.7	0.8549
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	7.7	0.8738
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	8.1	0.8236
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	11.2	0.8814

Compare expression of checked genes

Lus10039512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.