Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 473 / 2e-162 BGLU17 beta glucosidase 17 (.1.2) AT5G24550 469 / 5e-161 BGLU32 beta glucosidase 32 (.1) AT3G60140 454 / 2e-154 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT1G26560 451 / 3e-154 BGLU40 beta glucosidase 40 (.1) AT2G44450 447 / 9e-153 BGLU15 beta glucosidase 15 (.1) AT5G24540 446 / 8e-152 BGLU31 beta glucosidase 31 (.1) AT3G60120 445 / 2e-151 BGLU27 beta glucosidase 27 (.1) AT5G54570 445 / 2e-151 BGLU41 beta glucosidase 41 (.1) AT5G44640 443 / 3e-151 BGLU13 beta glucosidase 13 (.1) AT5G42260 443 / 4e-151 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024152 [exp] 1076 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10030577 [exp] 925 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030516 [exp] 908 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030518 [exp] 882 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10030911 [exp] 881 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10012869 [exp] 880 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10012871 [exp] 842 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012868 [exp] 797 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10039541 [exp] 786 / 0 AT2G44480 400 / 6e-135 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 538 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 522 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.004G040700 [exp] 520 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 493 / 1e-170 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 493 / 2e-170 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 482 / 5e-166 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 480 / 2e-165 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 480 / 3e-165 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 479 / 3e-165 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G110691 [exp] 478 / 1e-164 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10039513 pacid=23165235 polypeptide=Lus10039513 locus=Lus10039513.g ID=Lus10039513.BGIv1.0 annot-version=v1.0 ATGGCTTTAGCTACTATTGTAGCAGTGATGTTTCTGTTTGCCACGGCTTTAGCTCATAATGACATTTCTCCAACCTTAACTACTGATCCTTGCTCGGCCT CCGACTACAAATACGAGCCCTCCAAGGGGATTCCCAATGGCCGTTTGGATTTCCCTCCGGGCTTCGTCTTTGGCACTGCCACTTCTTCCTATCAGGTTGA GGGTGCTGCAACTTTTACGCATGGCAAGGGCCCGAGCGTCTGGGATAGATTTACCCATCAGTTTCCAGATAGGATTCTAGAAGGCGGCAATGGAGATGTG GCCATCAATCAGTACGAGTTGTACGAGGAGGATATCATAAACATGAAGTATTTGAACGTAGATGCTTATAGATTCTCCATTTCATGGCCGAGGATTATAC CATCCGGTAAGAGAAGTGACGGAGTCAATCAACAAGGCATCGACTTTTACCACAACCTCCTCGATGCACTCAAGAAACATGGAATCAAGCCGTACGTCAC AATATGGCATTGGGATACGCCTCAAGGTCTCGAAGCTGAGTACGGTGGCTTTTTAAGCCGCAGCATTGTTAAAGATTTTGAAGATTATTGTGATTTCTTA TTTGAAGAATATGGTTCCAAAGTAGACAAGTGGATAACTTTAAATGAGCCTATGGGTAACACGATAAAAGCTTACGATGAAGGAGTTTTTGCACCAGGAC ATTGTTCAGTATGGGTTGATAAAAAATGTCAACTTGGAGACTCTGCAACGGAACCTTATATTGTTACTCATAATCTTCTTCTTTCTCATTCCGCCGCTTA CCATTTATTCAAAAACAAGTACCAGAAACAGTATCCTACTGCAGAAATAGGAATAACTTATATCACATATTGGTTTGTTCCTTATTCTAATACTACCGAA GATATTGATGCTGCACAAAGAGCTCTAGATTGGATGTATGGCTGGTACATGGATCCAATCACATATGGCCGATATCCTTCTACCATGGTAGAATTATTGG GATCTCGTTTACCAACATTCACAGATGAAGAGTCACGCTTGCTTAAAAAGTCATATGATTTTGTGGGTCTCAATTACTACACGGGTTACTATGTGAAGAA CAATCCTGATTTCGATCGTGTTCATCTCCGATATGCAACTGATTCACATGGGATTACCTCACCCGACAAAGACGGAGTCTACATTGGAGAACATTTGGGT TCTTATTGGCAATATTTATATCCTGAAGGCATGCGGAAATTGTTGGAGTACACTAAAGAAAAATATGACGATCCTGTTATATACATTACGGAGAATGGAA TGTCGACGAAGGACAATGCTACTCAAACTCTAGCAGAGGCCTTGAAGGACGAGAGCAGGATTAATTTCTACAACAAGCATCTTACAAGTGTTCTGCAAGC TATTAATGAGAAGCAGGTGAAAGTGAAAGGGTTCTTTGCATGGTCGTATGCCGACAACTTCGAATGGAATGAAGGATACACGGTTAGGTTTGGATTGTAC TATATTAACTACACAGATCTCTCAAGACATCCAAAGGACTCAGCTTGCTGGTACACCAACTTCTGTAACAAGGCCCAACCCCAGTCTCTTAACAACTTTG ATCTTGATCAGCTCATCACTACACGCGCTGCTCTCGGAGGTCGACGGGCTCTCTCCTCCTCCGGCCGTCTACATTAA
AA sequence Show only first row Show all	>Lus10039513 pacid=23165235 polypeptide=Lus10039513 locus=Lus10039513.g ID=Lus10039513.BGIv1.0 annot-version=v1.0 MALATIVAVMFLFATALAHNDISPTLTTDPCSASDYKYEPSKGIPNGRLDFPPGFVFGTATSSYQVEGAATFTHGKGPSVWDRFTHQFPDRILEGGNGDV AINQYELYEEDIINMKYLNVDAYRFSISWPRIIPSGKRSDGVNQQGIDFYHNLLDALKKHGIKPYVTIWHWDTPQGLEAEYGGFLSRSIVKDFEDYCDFL FEEYGSKVDKWITLNEPMGNTIKAYDEGVFAPGHCSVWVDKKCQLGDSATEPYIVTHNLLLSHSAAYHLFKNKYQKQYPTAEIGITYITYWFVPYSNTTE DIDAAQRALDWMYGWYMDPITYGRYPSTMVELLGSRLPTFTDEESRLLKKSYDFVGLNYYTGYYVKNNPDFDRVHLRYATDSHGITSPDKDGVYIGEHLG SYWQYLYPEGMRKLLEYTKEKYDDPVIYITENGMSTKDNATQTLAEALKDESRINFYNKHLTSVLQAINEKQVKVKGFFAWSYADNFEWNEGYTVRFGLY YINYTDLSRHPKDSACWYTNFCNKAQPQSLNNFDLDQLITTRAALGGRRALSSSGRLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	0	1
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	1.0	0.9272
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	1.7	0.8785
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	2.0	0.8889
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	4.0	0.7975
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10022660 [exp]	5.3	0.6869
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	7.1	0.7789
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	8.4	0.7456
					Lus10039943 [exp]	10.4	0.7676
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	10.5	0.7184
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	13.3	0.7397

Compare expression of checked genes

Lus10039513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.