Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 399 / 2e-123 disease resistance family protein / LRR family protein (.1) AT4G20140 259 / 2e-71 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 243 / 1e-67 AtRLP12 receptor like protein 12 (.1) AT2G15080 241 / 5e-66 AtRLP19 receptor like protein 19 (.1.2) AT5G44700 237 / 5e-64 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G47890 233 / 3e-63 AtRLP7 receptor like protein 7 (.1) AT5G27060 229 / 4e-62 AtRLP53 receptor like protein 53 (.1) AT3G11080 227 / 1e-61 AtRLP35 receptor like protein 35 (.1) AT3G11010 227 / 1e-61 AtRLP34 receptor like protein 34 (.1) AT5G46330 227 / 6e-61 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002743 [exp] 1032 / 0 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 1021 / 0 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1009 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1007 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 998 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 975 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 971 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 966 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 957 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 526 / 3e-170 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 501 / 3e-161 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 495 / 7e-159 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 471 / 5e-150 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 469 / 1e-149 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 464 / 1e-147 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 464 / 2e-147 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 459 / 2e-144 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 459 / 6e-144 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 453 / 1e-141 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039514 pacid=23165133 polypeptide=Lus10039514 locus=Lus10039514.g ID=Lus10039514.BGIv1.0 annot-version=v1.0 ATGAATGCATTGACTACTGTTCTTAAAGTTCTCTTGGTCTCATTGGTCTGTATGGGTCTCTGGGACGAGACATTCGGTGCAGGCTGTAGTAAATATGAAA GAGAAGCACTTTTGATGTTCAGGGCTGATCTCGAAGACCCTTTCAGGTGGCTATCATCTTGGGTTGGCCAAGGAGATTGTTGCACATGGTACGGTGTTGT CTGCGACAATTTTACTGGCCATGTCACTGAGCTCCATCTCGGGTGGCCATCTTCCTCGGAGAAATTGGGTTTTACTGGTAAGATAAATCCTTCCTTGCTT GAGTTGAAGTATCTCACTTATTTGTGCTTGTCAAACAACGACTTTCAAGGGACTCCCATTCCGAGTTTTCTTGGGTCTATGAGCAATTTAACTTCCCTTT ACCTCAACGAAGCTGGATTTGGAGGAGTTATTCCCCATCAATTTGGGAACCTCACAAATCTGAAACAGCTTGGTTTGGAAGCTGCTGACTATGTGGTTTA TGCTGATAGTTTGCAGTGGCTTTCTGGTCTGCATTCATTGAATTACCTTGATTTGAGTAGTGTTGATCTTAGCAAGGCCTCTAACTGGTTGGAGATGATC AACACTCTGCCATCGCTTTCGACATTGTATCTTTCAAACTGCCAAATCCAGCATAGCCTTCCACTCGTAAATGTCAACCTGTCATCATCACTCTCTGTTT TGGATTTGTATCACAATAAATTTGGCCAAACTTCAATTATTACTAGTTGGGTTTCTCATCTCAAGGGCCTTACTTATTTGAATCTAGGAAACAACAATTT TGGCAGTCCGATTCCTTGCGAACTTCGAAACCTTACCTCTCTCAGGAGCCTTTACTTCGATGGCAACCATTTCAATCATTCAATACCCAACTGGTTGTAT GGTTTACACTATCTCGAGTACCTCAATCTACGTGGAAATAAGTTAGAGGGTACAGTCTCACATTCCATTGGGAACTTGTCTTCTCTTGTGAAACTTGACC TGTCATTGAATCCTGGCCTGGAATTCGAAATGGGGATTCCGGATTCTTTCAAACAGTTCTGTCATTTGAGAGCACTTTTTCTGGAATATGTTAAGGTAAA CCAAAGTTTGTCAGAAGTTCTTGATATCCTGTCAGAATGTGCTTCGGATTCTCTAGAGGTATTATCTATGTATAGTAGCCAACTGTTTGGTCAGTTGACG AACCGGATCGGAAAGTTCAACAGATTGGAACGTTTGGTACTCGATGGTAATTTCATTTCTGGTCCACTTCCAGTTTCTATAGGGGAATTGAAATCCTTGA ATTATGTGAACCTCGCAAACAACCAGATAAATGGTACTATTCCAGCGAGTTTCGGGTTGCTGGCAGAGTTGGAATCTGTTGATATTTCTCAGAACTCGAT GCAGGGCGATGTCTTCGCTGAAATCCAGTTTGCCAGCCTCACAAAGTTGGGTATGTTTCTTGCATCCGGAAACCAAATGGTGTTGAAAGATGGACCAAAT TGGTTTCCTTCGAAAGGACTTACAATACTGGACCTGGATTCCTGGTACGTTGGACCCGGCTTTCCTAATTGGCTCAAGAATATGGGGAGTCTGAAGTCTC TATCTCTATCAAACTCTGGAATTTCAGAACCAATTCCGGATTGGTTCTGGAGCATGTCGTCTGGATTTTACTATACGAATCTGTCTCACAACCAAATCCC AGGAAGGCTTCCACATGTCATCTCTTCTCTTGTTGAATATGACACATTGTTTGATTTAAGCTTCAACAGCTTGGAAGGTCCGTTGGCTTCGATTTCGTCC AACTTGACTTTGTTCGACATGTCCAACAATTTACTCTCTGGAGACTTGGTCAAGTTCCTATGTTTCAATCCGACTCAGATGAGGAATACACAATATCTCA GCCTTGGAGGTAATCTGTTGTCTGGAAATTTACCTGATTGCTTTAGTAATTGGAGGAGTTTGAAGGTGCTGAGACTAGGAAACAATAAGTTTACAGGAAG TATTCCAAAGTCAATTGGAACTTTGAGCTCACTTAAGTCTTTGCACATTCAGAACAATAGCTTGACTCGTGAAATTCCCCTTTCCATTGGAAAAAAATGC TCTGCTTTGGTCACAATTAACTTGAGTTATAATCAATTGGAAGGAGAGATTCCACAGTGGGGTGGGGTGAGCCTTTCTAGACTGTGTATACTAAATCTGC GTGGAAATCGGTTTCGTGGAGTCTTACCGAATGAGCTTTGCAACCTGCAGTCTTTACAAATCCTAGACCTTTCTCACAACATGCTTTCTGGCAGTTTGCC TCAATGTCTGGCCAATTTAAGTGCAATGGCTGTACCTACGAATGACCGGCTTTCCCAAATTTATCTGTTCTTCGGTGGGGGAGTTGTGTACAGCGAGAAT CAAGTCATTGTGACGAAAGGGAGCTTTGCTGAATACAGCACCATACTTAACTATGTCAGAAGTTTAGACCTTTCCTGCAATAACTTATCCGGAGTAGTTC CCTGGCAGATTTCAGACCTGATGGGATTGCAGTACCTAAATTTGTCGCATAACTCACTGTCGGGAATGATTCCTGAAGGTTTAGGAAAAATGAGAGCACT GGAATCCATGGACTTGTCTGTAAACCGGCTATCGGGGGTAATACCGGGTGGAGTTGCGAGCCTGACATTTTTGAGTCATTTGAACCTGTCTTTCAACAGG TTGAGTGGGAGGATTCCTTCGAGTACTCAGCTGCAGAGTTTCGATACATCCAGCTTTGTCGGTAACAAAGAACTATGTGGTCCTCCATTGAATGAGGGTT GTAGAAACACAGTGGGTGATGGGTTTGCTGGTAATGGTGGTGTTAAAGGAGATGAAGAATATTATTATGCATTCCATTGCTTCTGTGCTCTTGGGTTTGG AGCGGGGTTCGGATTTAGTGTTTTCATTTTTCAATATATCGCTGATGAAGAACATACTTTACAAAGGGTGGATCACGTGGGACACAAGTTATGCAACTTT CTCATGTTTGTACGTAGTCCTCAAGGAACCGGATCGGATCTTCCAGGTACAGGAATTAGGATGTAA
AA sequence Show only first row Show all	>Lus10039514 pacid=23165133 polypeptide=Lus10039514 locus=Lus10039514.g ID=Lus10039514.BGIv1.0 annot-version=v1.0 MNALTTVLKVLLVSLVCMGLWDETFGAGCSKYEREALLMFRADLEDPFRWLSSWVGQGDCCTWYGVVCDNFTGHVTELHLGWPSSSEKLGFTGKINPSLL ELKYLTYLCLSNNDFQGTPIPSFLGSMSNLTSLYLNEAGFGGVIPHQFGNLTNLKQLGLEAADYVVYADSLQWLSGLHSLNYLDLSSVDLSKASNWLEMI NTLPSLSTLYLSNCQIQHSLPLVNVNLSSSLSVLDLYHNKFGQTSIITSWVSHLKGLTYLNLGNNNFGSPIPCELRNLTSLRSLYFDGNHFNHSIPNWLY GLHYLEYLNLRGNKLEGTVSHSIGNLSSLVKLDLSLNPGLEFEMGIPDSFKQFCHLRALFLEYVKVNQSLSEVLDILSECASDSLEVLSMYSSQLFGQLT NRIGKFNRLERLVLDGNFISGPLPVSIGELKSLNYVNLANNQINGTIPASFGLLAELESVDISQNSMQGDVFAEIQFASLTKLGMFLASGNQMVLKDGPN WFPSKGLTILDLDSWYVGPGFPNWLKNMGSLKSLSLSNSGISEPIPDWFWSMSSGFYYTNLSHNQIPGRLPHVISSLVEYDTLFDLSFNSLEGPLASISS NLTLFDMSNNLLSGDLVKFLCFNPTQMRNTQYLSLGGNLLSGNLPDCFSNWRSLKVLRLGNNKFTGSIPKSIGTLSSLKSLHIQNNSLTREIPLSIGKKC SALVTINLSYNQLEGEIPQWGGVSLSRLCILNLRGNRFRGVLPNELCNLQSLQILDLSHNMLSGSLPQCLANLSAMAVPTNDRLSQIYLFFGGGVVYSEN QVIVTKGSFAEYSTILNYVRSLDLSCNNLSGVVPWQISDLMGLQYLNLSHNSLSGMIPEGLGKMRALESMDLSVNRLSGVIPGGVASLTFLSHLNLSFNR LSGRIPSSTQLQSFDTSSFVGNKELCGPPLNEGCRNTVGDGFAGNGGVKGDEEYYYAFHCFCALGFGAGFGFSVFIFQYIADEEHTLQRVDHVGHKLCNF LMFVRSPQGTGSDLPGTGIRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10039514 [exp]	0	1
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10000574 [exp]	5.6	0.6522
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10031282 [exp]	10.5	0.5818
					Lus10030782 [exp]	21.6	0.5504
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	21.8	0.6079
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10034704 [exp]	29.3	0.5494
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	40.3	0.5098
					Lus10000085 [exp]	65.0	0.4850
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	68.6	0.4750
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	69.2	0.4750
					Lus10000901 [exp]	69.2	0.4949

Compare expression of checked genes

Lus10039514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.