Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19510 97 / 1e-23 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 95 / 7e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16990 94 / 9e-23 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative AT2G20142 92 / 1e-22 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT3G44630 92 / 7e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 92 / 8e-22 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 91 / 1e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65390 88 / 3e-21 ATPP2-A5 phloem protein 2 A5 (.1.2) AT3G44400 89 / 6e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G51630 89 / 7e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009107 [exp] 216 / 2e-65 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042777 [exp] 166 / 5e-52 AT3G44630 136 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) Lus10006789 [exp] 176 / 1e-51 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005813 [exp] 175 / 6e-51 AT3G44480 297 / 2e-84 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10004073 [exp] 160 / 1e-48 AT4G11170 116 / 1e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 160 / 4e-46 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 159 / 7e-46 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017419 [exp] 157 / 2e-45 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 158 / 4e-45 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070436 [exp] 108 / 2e-30 AT2G20142 160 / 7e-49 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.013G096849 [exp] 107 / 2e-29 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070393 [exp] 113 / 3e-29 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069866 [exp] 103 / 4e-28 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G098100 [exp] 101 / 1e-27 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 107 / 3e-27 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G002500 [exp] 106 / 6e-27 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 105 / 8e-27 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 105 / 1e-26 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097050 [exp] 99 / 1e-26 AT5G36930 158 / 3e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10039515 pacid=23165166 polypeptide=Lus10039515 locus=Lus10039515.g ID=Lus10039515.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCTATTACGAGGATGGGGCTTCATCATCATCTACTCCTCGATACACTGGGAAATGGGAGTATGATGTTTTTGTTTGTTTTAGAGGCAAGG GCACCCGAGGTATCTTTACAAGCTACATTGCAGGACATCTGCGCGAGCAGGGACTGCAAGTCTTCACGGATGACATGTTTGAAAGAACAGAGAACATAGA TGAGCTACTCTTTATCCTTGCTAGCTCTGCAATATCAGTTGTTATATTCTCTGAGAGTTTTGCTGAGTCTAGTTGGTGCTTGGACGAGGTAGCCACCATT GCAGAAAGAATGGGAAGTGTCGGACATCAGGTGCTGCTACCGGTCTTCTACAAAGTAACTCCAGACAATCTGTCAGATGATACCGACAGTATTTTTGGCA CTTATGCGTCTATAGTTGATACCTTTCATAAACCGAGACTAGAGCAGAAGCAGAGATGGATGGATGCTTTGAAGGCGGTGGCTAAGCGTGCTGGGCCTCC CTCAAGTGAGATCAATTAA
AA sequence Show only first row Show all	>Lus10039515 pacid=23165166 polypeptide=Lus10039515 locus=Lus10039515.g ID=Lus10039515.BGIv1.0 annot-version=v1.0 MASSYYEDGASSSSTPRYTGKWEYDVFVCFRGKGTRGIFTSYIAGHLREQGLQVFTDDMFERTENIDELLFILASSAISVVIFSESFAESSWCLDEVATI AERMGSVGHQVLLPVFYKVTPDNLSDDTDSIFGTYASIVDTFHKPRLEQKQRWMDALKAVAKRAGPPSSEIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10039515 [exp]	0	1

Compare expression of checked genes

Lus10039515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.