Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024153 [exp] 502 / 6e-179 ND 49 / 5e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027600 [exp] 369 / 1e-126 ND / Potri.003G196200 [exp] 315 / 2e-105 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039517 pacid=23165292 polypeptide=Lus10039517 locus=Lus10039517.g ID=Lus10039517.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTGCTGCTTCTCTATCAGCTCCTCCATTCATTCATTCTGCTTCTCCTCTCAAATCTTCTTCCTCCTCGTTTCCCCCCAAGTCCTTCTCCT CCAGGCTTCAACCCTTGTGTTCCAATTTTTCCTGTTGTGGAGGCTCTCGCCCTCGTTACCAGACCGGCGACCTCAAGTTCCCTTTACACGACGCCCTGGA TTCCTCCCGCATGGAAACCTCTCATGCCAGGGAGGCTAGGCGGGGGTTCTTGTCTCAAATTGAGAAATTATCTGATATCGAGAGGGAAACCAGCATTAGC ATTAATCGACGTGTTGATTTGGGGAAAACCGCATTGTACATAGCTGCTGAGGATGATTCTCTCATATCACACTCCTCCGTCCCCCTCCCCGTGGATTCCT TCATTCAAAGACTCGACGATCTTTCTATGGATTTCTGTTCCACCAATAGCTCCTCCATATGCTCTTCACCGGACAATTTCCTCGACAGTTTAGAGAAATA CTTATACATTAACAAGGTTTTAATACATCGATCGGGCTCAGCAGTTATGCTGTCTCTTATTTACTCCGAAATTCTGAAAGTGATTCGTTTATGGGGCCTC CTCGATTTCGATTGTGAGATATACTATCCTCATAGCAGCAGTGGCCTTCCCAGAGGCTATGATAAGAAGACTAGCAAGGAGTCTGATCAGTTGCATATAA TGACGTCTCAAAATCTGTTACAAGAGATATTGAGAAACTTGAAGGAGTCTTTCTGGCCATTTCAACATGATCAGACCCGTAGCTTATTCTTGAGCGCCGC ACATGCTGCCATCGATAGAACTAACACTACCGAAGAGAGGTTCTTGCTCTCTCCAGTTGCAATTTCACGTGGCTATCAGCTAGCATCTGCAAAGGCTGCT CAGCACAGGTTAGATCGTGGAGTTTGGACTAGTGTTACTTTTGGAGACATGAGACAAGCAATGTCTGGTAGGTGA
AA sequence Show only first row Show all	>Lus10039517 pacid=23165292 polypeptide=Lus10039517 locus=Lus10039517.g ID=Lus10039517.BGIv1.0 annot-version=v1.0 MAAAAASLSAPPFIHSASPLKSSSSSFPPKSFSSRLQPLCSNFSCCGGSRPRYQTGDLKFPLHDALDSSRMETSHAREARRGFLSQIEKLSDIERETSIS INRRVDLGKTALYIAAEDDSLISHSSVPLPVDSFIQRLDDLSMDFCSTNSSSICSSPDNFLDSLEKYLYINKVLIHRSGSAVMLSLIYSEILKVIRLWGL LDFDCEIYYPHSSSGLPRGYDKKTSKESDQLHIMTSQNLLQEILRNLKESFWPFQHDQTRSLFLSAAHAAIDRTNTTEERFLLSPVAISRGYQLASAKAA QHRLDRGVWTSVTFGDMRQAMSGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039517 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	3.5	0.7978
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	7.5	0.7808
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	7.7	0.7627
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	9.2	0.7788
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	11.2	0.7653
AT3G09470			Major facilitator superfamily ...		Lus10003979 [exp]	16.7	0.7190
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	16.7	0.7337
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	18.4	0.6625
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	19.6	0.7533
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	20.7	0.7614

Compare expression of checked genes

Lus10039517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.