Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63940 596 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 483 / 2e-161 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 469 / 2e-156 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 371 / 3e-120 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 324 / 4e-104 Protein kinase superfamily protein (.1.2.3) AT5G65530 249 / 2e-75 Protein kinase superfamily protein (.1) AT5G56790 250 / 2e-73 Protein kinase superfamily protein (.1) AT1G55200 248 / 1e-72 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G66460 241 / 2e-72 Protein kinase superfamily protein (.1) AT5G57670 243 / 6e-72 Protein kinase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024154 [exp] 1201 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 503 / 3e-169 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 498 / 1e-167 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 391 / 3e-127 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 387 / 7e-126 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017273 [exp] 299 / 1e-92 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013566 [exp] 293 / 2e-91 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10042327 [exp] 256 / 5e-76 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10006148 [exp] 256 / 2e-75 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102400 [exp] 757 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 731 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 509 / 1e-171 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 474 / 3e-158 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 439 / 1e-145 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 426 / 2e-140 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 338 / 2e-105 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.009G140300 [exp] 266 / 2e-80 AT4G35030 245 / 9e-75 Protein kinase superfamily protein (.1.2.3) Potri.018G096100 [exp] 259 / 2e-77 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 254 / 6e-76 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10039518 pacid=23165192 polypeptide=Lus10039518 locus=Lus10039518.g ID=Lus10039518.BGIv1.0 annot-version=v1.0 ATGAAGCTGACTGAGAGTGAAGACGCGGCGGCGGGCAGCAGCAGCAGCGGTGGAGGAGGAAAGGAAGTGGTGGTTGTCGGAGTAAGGTTGGATTCACAGA GTAAAGAGCTGCTTACTTGGACTCTTATGAAAGTTACCAAGCCTGGGGACCGTGTTATTGCTCTTCATATTCTTAATTCCACAGCCACTGCAGAAATTGA AGGAGGAACAGGATCGCTTCTGGCTTTAGTCAAGACATTTGATTCTCTGTTGGCAGTTTACGAAGGGTTCTGCAACCTAAAGCAGGTGGATTTGAAGCTA AAAGTGTGTAGAGGTGAATCAGTGAAGAGAATTCTGGTGAGGGAAGCGAAAGCGAATGGTGCTTCCAAAATTATTGTTGGGACTTCCAAGAATGGATCGA TCCAAGAAAAGCATACTTCTTCCAGGAAAGCACCGACTGTGAATTCTCTAGATCGTGCTTCAAGCTTGTCATTGGAGGATGAAAGAGAACCAGCAAGATC ATGTCTTGCTCATAAGGTCCATAGTTCTAGAGCTTTGATAACAACTTCGCAGTCTAATGTGACGGCTGAGTTTCCAGATCACAAATTGGGTTGGAAGCTT GTTCGCCAGACACTTACTGGAATGCAGGAAAGTACAAAGAAATTCCATGCCTCAAAGGTAGTGAAAAAGTTTTTAAAACTACCAACTCATAATTCATCTT CTTCATTGGTGTATCCTGATCAAAGGCATAGTGGTTCCCGTTCACACAAAGATAAGTCGGCCCACTCGAAAGGACAGAGCAGCGCTGTGGTAGCAGTCGG TACTAAGGCAGCAGTTGCACTGTCATCCGTTTCACCCTCCTTCTCAGAGGGTCTTCCGGAAGAGTTGAAAGGTTTGTATGAAAAGTATTCATCAATGTGT CGATGGTTCAGCTATGAAGAACTTGTGGCAGCCACGTCTAACTTCGCTCCAGAAAACATAGTTGGAACTGGTGGGAGTAGTCATGTCTATAAAGGGATTC TTCCTAGTGGCAAGGAATTGGCAGTGAAAATCTTGAAGCCTTCCGATGATGTCCTGAAAGAGTTTGTTGTAGAAATCGAGATGATTACAACCTTGCACCA CAACAACATAATATCTCTCTTCGGTTTCTGTTTCGATCGAAGTAAATTACTTTTGGTGTATGATTTTCTATCAAGAGGAAGCCTTGAGGAGAACCTTAAC GGTAATAAGAAGGATGTTGTGAACTTTGGTTGGCATGCGAGACATAAGGTGGCCATTGGTGTCGCCGAAGCACTTGACTATTTGCACAACCACTGTGATC ATCCTGTGATTCATAGGGACGTCAAGTCCTCGAATGTTCTTCTCTTTGATGATTTTGAGCCACAGCTTTCCGATTTCGGTCTAGCTTGCTGGATGTGTTC GTCAACAGAAGAAACCAACAGTGACGTTGCAGGAACCTTTGGTTACTTGGCTCCTGAGTACTTCATGCACGGAAGAATGAGCGACAAGTTAGACGTCTTT GCATTTGGGGTGGTGCTTCTTGAGCTTCTCTCTGGCAGAATGGCAATTGCTAGCCCAGATAGTCAAGGCCAAGAGAGCCTTCTTATGTGGGCGAGGCCGA TTTTACATGGCGGTAAACAGTCTCAGTTACTGGATCCACATATAGATACTGAGGATTCAGAGGATGAAATTGAGAGAATGGTCTTGGCTGCAACTCTTTG CATTAGAAGCTGTCCCAAATCCAGGCCACAAATCAGCCTTATGGTTTCTCAGATACTGAAGCTTCTACAAGGTGACAGTGAAATAACAAAATGGGCAAGG CAAGAAATCGCTCGATCAGAAGTCGGTAATGGAAGTGAGGGGAGAAGAGATCCAAGCAACATCCAATCCCATCTCAATCTTGCATTCCTAGATCTGCAGG ATGATACCCTTTCCATCAGCAGTCATAGCGGACATGGCGTTACAGTCGAAGATTACTTGCAAGGGAGATGGAGCCGCACACCGAGTTTTGACTAG
AA sequence Show only first row Show all	>Lus10039518 pacid=23165192 polypeptide=Lus10039518 locus=Lus10039518.g ID=Lus10039518.BGIv1.0 annot-version=v1.0 MKLTESEDAAAGSSSSGGGGKEVVVVGVRLDSQSKELLTWTLMKVTKPGDRVIALHILNSTATAEIEGGTGSLLALVKTFDSLLAVYEGFCNLKQVDLKL KVCRGESVKRILVREAKANGASKIIVGTSKNGSIQEKHTSSRKAPTVNSLDRASSLSLEDEREPARSCLAHKVHSSRALITTSQSNVTAEFPDHKLGWKL VRQTLTGMQESTKKFHASKVVKKFLKLPTHNSSSSLVYPDQRHSGSRSHKDKSAHSKGQSSAVVAVGTKAAVALSSVSPSFSEGLPEELKGLYEKYSSMC RWFSYEELVAATSNFAPENIVGTGGSSHVYKGILPSGKELAVKILKPSDDVLKEFVVEIEMITTLHHNNIISLFGFCFDRSKLLLVYDFLSRGSLEENLN GNKKDVVNFGWHARHKVAIGVAEALDYLHNHCDHPVIHRDVKSSNVLLFDDFEPQLSDFGLACWMCSSTEETNSDVAGTFGYLAPEYFMHGRMSDKLDVF AFGVVLLELLSGRMAIASPDSQGQESLLMWARPILHGGKQSQLLDPHIDTEDSEDEIERMVLAATLCIRSCPKSRPQISLMVSQILKLLQGDSEITKWAR QEIARSEVGNGSEGRRDPSNIQSHLNLAFLDLQDDTLSISSHSGHGVTVEDYLQGRWSRTPSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	0	1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	1.7	0.9432
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	2.4	0.9421
AT1G09050			unknown protein		Lus10037506 [exp]	2.6	0.9328
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	3.0	0.9385
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	3.2	0.9305
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	3.7	0.9284
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	4.0	0.9311
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	6.0	0.9331
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	7.1	0.9270
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038640 [exp]	7.5	0.9049

Compare expression of checked genes

Lus10039518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.