Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54440 567 / 0 glycoside hydrolase family 2 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024155 [exp] 752 / 0 AT3G54440 1594 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196500 [exp] 635 / 0 AT3G54440 1650 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Potri.001G027400 [exp] 633 / 0 AT3G54440 1628 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF02929 [flax] [poplar] Bgal_small_N Beta galactosidase small chain
Representative CDS sequence Show only first row Show all	>Lus10039519 pacid=23165325 polypeptide=Lus10039519 locus=Lus10039519.g ID=Lus10039519.BGIv1.0 annot-version=v1.0 ATGAAGGATGGCAAGCTTAAGATAATCAACACTAATTTCTTTGATACAACGCAAGTGTTGGGGTTCACTTGGGCTGCTCATGGTGATGGAATTGAACTTG GATCTGGAGAACTCTCCCTTCCTGTTATAGAACCTCAGAAAAGTTATGAAATGCAATGGGAATCTGGTCCATGGTATTCCCTATGGGCTTCATCAAATGC GGGAGAGGTTTTCATGACTGTAACAGCTAAGCTTTTGCAGTCCACACATTGGTTGGAAGCCGGTCACATCATTTCATCCACCCAACTGCAGTTGCCTGGC AGAAAAGAGATCTTACCTCATGCCCTCAAAAGCAAAGATGCCCCGATCTCCACCGAAGTTGTAGGGGATGTCATCAGGATAAGCCATCAGAGCCTTTGGG AGATTACATTTGACAAGTTGACAGGAGCAGTCGCAAGCTGGAAGGTTAAAGGAGTTTCTGTACTGAACAAAGGAATCTTCCCATGTTTCTGGCGCGCCCC CACCGACAATGACAAGGGAGGTGAAGATTGTAGCTACTACTCCAAGTGGAAAGCAGCTCATCTTGACTCTATCGTATTTCAGACAAAGAGCTGTTCCATT CAGAACTCAGCAAACGACCATGTGAAAATCGAAGTGGTTTACAGTGGCGTTCTGAGCGGTGGGGATAGTTCAACAGTTCTGTTTGAAGTGGAAATGACCC ACATTGTCTATGGTTCTGGGGATTTGATCGTTGAATGCAAAGCAACTCCAAGTCCGAACCTTCCGCCTTTGCCCCGTGTAGGAGTTGAGTTCCACCTGGA GAAGACCATGGATCAGGTTAGTTGGTATGGAAGAGGCCCATTCGAGTGCTACCCGGATAGGAAAGCAGCTGCCAACGTTGGAGTTTATGAACAGACGGTG GCTGACATGCACGTTCCTTACATAGTACCTGGAGAATGTGGCGGCAGAGCCGATGTCAGATGGGTAACCTTCCAGGACAAGGATGGTGTAGGAATCTTTG CATCGTCGTATGGCAGCTCCCCGCCATTGCAAGTAAGTGCAAGTTACTACTCGACCGCAGAGCTTGACAGGGCAACACATAACGAAAGACTTATTCGAGG AAACGACATTGAGGTACATTTGGACCATAAACATATGGGTTTGGGAGGGGATGACAGTTGGTCACCATGTGTTCATGAGAAGTTCTTGGTTCCAGCTATG CCATATACATTCTCACTCAGAATGTGCCCAGTCACTGCGCAAACTTCTGGACTTGACACCTACAAGTCCCAAGTCCAGAATTAG
AA sequence Show only first row Show all	>Lus10039519 pacid=23165325 polypeptide=Lus10039519 locus=Lus10039519.g ID=Lus10039519.BGIv1.0 annot-version=v1.0 MKDGKLKIINTNFFDTTQVLGFTWAAHGDGIELGSGELSLPVIEPQKSYEMQWESGPWYSLWASSNAGEVFMTVTAKLLQSTHWLEAGHIISSTQLQLPG RKEILPHALKSKDAPISTEVVGDVIRISHQSLWEITFDKLTGAVASWKVKGVSVLNKGIFPCFWRAPTDNDKGGEDCSYYSKWKAAHLDSIVFQTKSCSI QNSANDHVKIEVVYSGVLSGGDSSTVLFEVEMTHIVYGSGDLIVECKATPSPNLPPLPRVGVEFHLEKTMDQVSWYGRGPFECYPDRKAAANVGVYEQTV ADMHVPYIVPGECGGRADVRWVTFQDKDGVGIFASSYGSSPPLQVSASYYSTAELDRATHNERLIRGNDIEVHLDHKHMGLGGDDSWSPCVHEKFLVPAM PYTFSLRMCPVTAQTSGLDTYKSQVQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54440			glycoside hydrolase family 2 p...		Lus10039519 [exp]	0	1
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	6.4	0.9050
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	8.0	0.9005
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10027876 [exp]	12.4	0.8651
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	15.3	0.8367
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	17.4	0.8782
AT2G39950			unknown protein		Lus10028266 [exp]	18.0	0.8831
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	19.0	0.8641
AT3G14830			unknown protein		Lus10041938 [exp]	19.4	0.8900
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	22.3	0.8821
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	22.6	0.8541

Compare expression of checked genes

Lus10039519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.