Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54440 969 / 0 glycoside hydrolase family 2 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024155 [exp] 1252 / 0 AT3G54440 1594 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027400 [exp] 1014 / 0 AT3G54440 1628 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Potri.003G196500 [exp] 1001 / 0 AT3G54440 1650 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Potri.013G021200 [exp] 45 / 0.0002 AT1G09010 1457 / 0.0 glycoside hydrolase family 2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF02836 [flax] [poplar] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0159 [flax] [poplar] E-set PF00703 [flax] [poplar] Glyco_hydro_2 Glycosyl hydrolases family 2
Representative CDS sequence Show only first row Show all	>Lus10039520 pacid=23165301 polypeptide=Lus10039520 locus=Lus10039520.g ID=Lus10039520.BGIv1.0 annot-version=v1.0 ATGATAGAAAATCTCGATGTGTTCGCAGGGATGGTGTTCCCTTGTGAAGATGTGTCCCACAGAGTTTGGGAGGATCCCTCGTTTATAAAGTGGAGGAAGA GAGATCCTCATGTACCTTTGCACTGCCATGAATCTGTCGAAGGATCTCTAAAGTACTGGCATCAGCGTAACAGAGTGGATGTTTTGTTATCAAAATCTGC TGTCTGGGGCGATGATGCCGTCCAAGAAGCTCTTGACTCTGCTGCCTTTTGGGTTAAGGAATTGCCTTATGTTAGGTCTTTGTCTGGCTTCTGGAAATTT TTCCTGGCTCCATGCCCTTCCAAAGTTCCACCTGCATTTTTTGATGTTGCATTTCAGGATGCTGAATGGGACATGTTACCTGGTTTTGCTACTCAAATGG CTGGACCAGTGCCTTCTAATTGGCAGATGCATGGATTTGATAAGCCTATATATACAAATATTGTATATCCATTTCCCCTCGATCCTCCACACGTACCGCA GGATGATAATCCTACAGGCTGTTACAGAACATGCTTCCAGATTCCTACAGAATGGCAGGGTCGTAGGATCTTCTTGCACTTTGAAGCTGTTGATTCTGCA TTTTTTGTTTGGGTTAATGGTGTACTTGTGGGATATAGTCAGGACAGTAGGTTACCTGCTGAGTTCGAAATCTCGGATCACTGTCATCCAAGTGGGTCAG ATGAGATGAATATTTTAGCTGTTCAAGTACTTAGGTGGAGTGATGGGTCTTATCTTGAAGATCAAGATCATTGGTGGTTATCTGGTATCCACCGTGATGT GCTTCTTCTATCAAAACCTCAGGTTTTCATCACGGACTACTTTTTCAAGTCGAGCCTTACTGAAGATTTTTCTTCTTCAGATATTCAGGTGGAAGTGAAA ATAGACAACACCAGAGCGAATCCAAAGGATGACATTCGTGCCAGCTTTACCATGGACGCTGCATTATATGGCACTGGAAGCTGGTATGCAGGCGATAAAT CTGGCCTGATTTCAACCAACGTAGCTAACTTGACCGTCATTCCCTCCTCTGATGCTATTTTAGGGTTTATTGGTTATACACTTGCTGGTAAGCTGGACAT GCCTAAGCTTTGGTCAGCGGAACAGCCAAATCTGTACATTCTTGTTGTCACCCTCAAAGATGCATCAGGACACGTAGTTGACTGTGAATCATCCCTGGTA GGCATAAGACAAGTATCAAAGGCCCCAAAACAATTGCTTGTGAACGGGAAGCCAGTCATGATAAGAGGTGTGAATAGGCATGAACATCATCCGCGTATTG GCAAAACAAACACTGAATCCTGCATGATTAAGGATCTTGTTCTTATGAAGCAATACAATATTAATGCTGTCAGAAATAGCCATTATCCTCAGCACCCCCG CTGGTATGAGCTGTGTGATCTCTTTGGCATGTACATGATAGATGAAGCAAACATTGAGACACATGGCTTTCATCTCTCTGGACACCTGAAGCCCCCTGCA ATGGAAATTAGTTGGGCTACTGCTATATTGGAACGTGTGATAGGCATGGTTGAGAGGGACAAAAACCATGCCAGTATAATATCATGGTCCTTGGGAAATG AGTCCTCGTATGGACCCAATCATTCTGCCGCAGCAGGTTGGATTCGTGAAAAGGATACCTCACGGTTGTTGCACTATGAAGGAGGTGGATCTAGAACTTC GTCTACTGACATTATTTGCCCCATGTATATGCGTGTTTGGGACATACTGAAGATCGCAAAAGACCCAACTGAATTGCGTCCTTTGATATTATGCGAGTAT TCACATGCTATGGGAAACAGCAACGGGAGCTTAGATGAATACTGGGAGGCGATAGATAGCACATTTGGTCTCCAAGGAGGCTTCATCTGGGACTGGGTTG ACCAGGTATAG
AA sequence Show only first row Show all	>Lus10039520 pacid=23165301 polypeptide=Lus10039520 locus=Lus10039520.g ID=Lus10039520.BGIv1.0 annot-version=v1.0 MIENLDVFAGMVFPCEDVSHRVWEDPSFIKWRKRDPHVPLHCHESVEGSLKYWHQRNRVDVLLSKSAVWGDDAVQEALDSAAFWVKELPYVRSLSGFWKF FLAPCPSKVPPAFFDVAFQDAEWDMLPGFATQMAGPVPSNWQMHGFDKPIYTNIVYPFPLDPPHVPQDDNPTGCYRTCFQIPTEWQGRRIFLHFEAVDSA FFVWVNGVLVGYSQDSRLPAEFEISDHCHPSGSDEMNILAVQVLRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQVFITDYFFKSSLTEDFSSSDIQVEVK IDNTRANPKDDIRASFTMDAALYGTGSWYAGDKSGLISTNVANLTVIPSSDAILGFIGYTLAGKLDMPKLWSAEQPNLYILVVTLKDASGHVVDCESSLV GIRQVSKAPKQLLVNGKPVMIRGVNRHEHHPRIGKTNTESCMIKDLVLMKQYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFHLSGHLKPPA MEISWATAILERVIGMVERDKNHASIISWSLGNESSYGPNHSAAAGWIREKDTSRLLHYEGGGSRTSSTDIICPMYMRVWDILKIAKDPTELRPLILCEY SHAMGNSNGSLDEYWEAIDSTFGLQGGFIWDWVDQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	0	1
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	2.4	0.9582
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	4.0	0.9255
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	6.5	0.9427
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	7.3	0.9308
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	8.9	0.9272
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	9.9	0.9184
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	10.4	0.9205
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	11.5	0.9016
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	12.2	0.9269
					Lus10013097 [exp]	14.0	0.9000

Compare expression of checked genes

Lus10039520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.