Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54450 574 / 0 Major facilitator superfamily protein (.1) AT3G53960 430 / 2e-144 Major facilitator superfamily protein (.1) AT2G37900 421 / 4e-141 Major facilitator superfamily protein (.1) AT1G22540 398 / 2e-132 Major facilitator superfamily protein (.1) AT1G72125 393 / 2e-130 Major facilitator superfamily protein (.1) AT1G72140 391 / 9e-130 Major facilitator superfamily protein (.1) AT1G72130 381 / 5e-126 Major facilitator superfamily protein (.1.2) AT1G62200 382 / 7e-126 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G22550 378 / 1e-124 Major facilitator superfamily protein (.1) AT1G72120 376 / 6e-124 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024156 [exp] 939 / 0 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 426 / 6e-143 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 392 / 2e-129 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 391 / 9e-127 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10034206 [exp] 383 / 9e-126 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 377 / 9e-124 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 377 / 1e-123 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10035516 [exp] 376 / 2e-123 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10008252 [exp] 373 / 2e-122 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124706 [exp] 669 / 0 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 667 / 0 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 654 / 0 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 446 / 1e-150 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 430 / 8e-145 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.006G092000 [exp] 426 / 6e-143 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 424 / 2e-142 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 420 / 7e-141 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 417 / 6e-140 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 417 / 1e-139 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10039521 pacid=23165120 polypeptide=Lus10039521 locus=Lus10039521.g ID=Lus10039521.BGIv1.0 annot-version=v1.0 ATGGATTCATCCGTTGCTCCGGCAGCGCTGGACGAAACCGGCGGCGGCGACCAGAAGAATACAAAGGAAAGCAGGAAAGGCGGCTGGAATGCGGCCTTCT TCATCATCTTTGTGGAGATGGCAGAGCGGTTTGCGTTCTTCGGGTTGTCCGGAAACCTGATAACTTACCTGACAAGCCACCTCCACCAGCCGACAGTAAC GGCCGTCAAGAATATCAACACATGGGTTGGAGTGTCGTCCCTTTTCCCGATCGTCGGAGCAGTTGTCGCCGACTCCTACCTCGGCCGGTTCACCACAATC CTGTTGGCGTCCTCCATCTACTTCACCGGGATGGTGCTGTTGACGTTATCAGTGTCAGTGGTGCCGATGAGTCACCGGGAGGCGGTGTTCTTCACGGCGC TATATGTGCTGGCGGTGGGAGAAGGGGGACACAAGCCTTGCGTGCAGACGTTCGCTGCCGACCAGTTCGACGAGGATAAGCCGGATGAAAAGGCGGCTAA GAGTTCATTCTTCAACTGGTGGTACTTGGGAATTGTGTTTGGCGCTTCTGCTGCTGTCTTGCTTGTCATTTACATCCAGGATAACGTTGGATGGACGGAG GGACTAGGGATCCTGGCGGGGGCTCTGGGGGCCGCGCTTGTGGTGTTTTTAACAGGGATAAAGACTTACAGGAAACAGGCCCCTGTCGGAAGTCCGTACA CTCGAGTTGCGCAGGTGGTGGTGGCCGCTATGAGGAACAGGCGCGTGGACGCAAGTGGAGGTGAGTGCATCATGTGCTACGAGGAGGAGGATGATGTAGA GGGTAAGCATGGAATGAGTAGGACCAATCAGTTCAGATTCTTGGACAAGGCAGCCATCATGGACAGTAGCTCAACTACCCGAGGGAGCAGAAATAGGAAC CCATGGGAGGTATGCACAGTAAGCCAAGTGGAAGAAGTGAAACTCCTAATCCGCCTAATACCAATATGGCTATCATGCCTAATGTTCACAGTCGTCCTCA CCCAAAACCACACCTTCTACGTCAAACAAGCCACCACCCTCGACCGCTCCTTCTCCTCCAAACAACACTTCCAAATCCCGGCCGCTTCCTTCCAGAGCCT CATCGGCCTCACCATCCTCATAACCGTCCCTCTCTACGACCGCATTTTCGTCCCTTTTGCCCGCCGCATCACCGGCCACCCTTCGGGAATCACCGTCCTC CAGCGCATCGGCTTCGGCCTCTTCCTCTCCGCCGTCGAGGCCTCCGTGGCCGCCCTTGTCGAGAAGAGGCGGCTCCACGTGGTGGCAGCAGCGGGTGGGA CAGGGACCCACCCCATGATGAGCGTGTGGTGGCTGATCCCGCAGTACGCGGTGAGCGGGATGTCGGACGCGTTTACCGTGGTGGGGCTGCAGGAGCTGTT CTACGGCCAGATGCCGGTGTCGATGAGGAGTATGGGTGCGGCGGCGTTTACGAGTTTGTTGGGGATCGGGAGCTTTCTGAATACGGCGGTGATCATGGTG GTGCAGGGGGCGAGTGGCGGCAAGTGGCTGAAGGGGGATGATTTGAACAGGATAGGGTTGGATAAGTTTTATTGGGTGCTGGCTGGGATGAGCGTGGTGA ATCTTTGTGTTTACATGTTGATTGCTAAGGGTTTTGTTTATAAGAGATCAGCGGCTGACGGCGGCGGAGGAGATGAGCATGATGAAGGGAAGGAGTTGGG GTTTGTTGGAGGGAAGGTGGACGAATTTACTCCGACGACTGGAAAGGCTGACTACCGTTGA
AA sequence Show only first row Show all	>Lus10039521 pacid=23165120 polypeptide=Lus10039521 locus=Lus10039521.g ID=Lus10039521.BGIv1.0 annot-version=v1.0 MDSSVAPAALDETGGGDQKNTKESRKGGWNAAFFIIFVEMAERFAFFGLSGNLITYLTSHLHQPTVTAVKNINTWVGVSSLFPIVGAVVADSYLGRFTTI LLASSIYFTGMVLLTLSVSVVPMSHREAVFFTALYVLAVGEGGHKPCVQTFAADQFDEDKPDEKAAKSSFFNWWYLGIVFGASAAVLLVIYIQDNVGWTE GLGILAGALGAALVVFLTGIKTYRKQAPVGSPYTRVAQVVVAAMRNRRVDASGGECIMCYEEEDDVEGKHGMSRTNQFRFLDKAAIMDSSSTTRGSRNRN PWEVCTVSQVEEVKLLIRLIPIWLSCLMFTVVLTQNHTFYVKQATTLDRSFSSKQHFQIPAASFQSLIGLTILITVPLYDRIFVPFARRITGHPSGITVL QRIGFGLFLSAVEASVAALVEKRRLHVVAAAGGTGTHPMMSVWWLIPQYAVSGMSDAFTVVGLQELFYGQMPVSMRSMGAAAFTSLLGIGSFLNTAVIMV VQGASGGKWLKGDDLNRIGLDKFYWVLAGMSVVNLCVYMLIAKGFVYKRSAADGGGGDEHDEGKELGFVGGKVDEFTPTTGKADYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	0	1
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	1.0	0.9777
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	2.4	0.9675
					Lus10041251 [exp]	2.4	0.9760
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	2.4	0.9758
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	4.0	0.9710
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	5.5	0.9704
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	6.0	0.9586
AT3G25590			unknown protein		Lus10034409 [exp]	6.3	0.9488
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	7.5	0.9637
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	8.8	0.9546

Compare expression of checked genes

Lus10039521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.