Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 147 / 3e-38 disease resistance family protein / LRR family protein (.1) AT2G26330 137 / 5e-35 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 136 / 8e-35 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 135 / 3e-34 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G47090 133 / 1e-33 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 130 / 2e-32 Leucine-rich repeat protein kinase family protein (.1) AT1G75640 129 / 2e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 129 / 4e-32 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G12610 125 / 4e-32 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT4G36180 128 / 6e-32 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039531 [exp] 391 / 1e-127 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 385 / 3e-125 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 328 / 1e-103 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 327 / 4e-103 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 326 / 1e-102 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 316 / 2e-98 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 307 / 1e-95 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10001034 [exp] 299 / 6e-94 AT2G34930 360 / 1e-110 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 298 / 1e-92 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 223 / 2e-67 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 188 / 2e-52 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 185 / 2e-51 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 184 / 6e-51 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 173 / 2e-47 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 173 / 3e-47 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 169 / 5e-46 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 169 / 6e-46 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 159 / 2e-42 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 158 / 3e-42 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039522 pacid=23164994 polypeptide=Lus10039522 locus=Lus10039522.g ID=Lus10039522.BGIv1.0 annot-version=v1.0 ATGTCGTTTACAAAAGTGCACATGAGTGTATCAAATGTGCTTGATATCCTTGGACGTTGTTCTTCTAAAACCTTAAAGTTTCTGGCTTTGAGTGGCTGCC AACTTTTTGGTCAGTTGACAGATCGGATTGGGAATTTCAAGAGACTAAGTCGTCTTTCCCTCGCTGGAAATTCCATTTCTGGTCCTATACCGATGTCATT TGGAGAAATGGAGTCCTTGAGTTTCGTGGACCTGTCAGGAAACAGGATAAATGGGACGATTCCAACTAGTTTTGGGAAACTTGCAAACTTGGAATGGGCT GACATTTCTATCAACTTAATGGAAGGTGAGATCCCAAGGTCAATTGGAGCTTTAACTTCCCTTGTTTCTTTGCGCCTTCAGAATAATAGTTTGACTGGTG AAATCCCACCATCCTTTAGTATCTGTTCTAGTCTAGTCTCCATCGACCTAGGAGATAATGAATTGAAAGGAAAAATTCCAGATTGGATAGGTGAAAGCTT TCCAAGACTGTGCATCAACAACTTGCATGGGAATAAGCTCCAAGGCAACATTCCTGAGGAGCTTTGTCATTTGCAGCTTCTGCAAATATTGGACCTTTCT CATAACTTTCTATCTGGGAACTTGCCAGATTGCATTGGCAATTTTAGTGCCATGGCTACCAGCTCCGAAAGAGATCCAGGGGGAGTGATTTATTTGTTTT TTGGAGGAGCAGAGTCGTTTGTGGAATATCAGGTTCTGGTGACAAAATGGCAGGTTAAGGGTTACAGCACCATACTGAATTATGTAAGAAGTCTGGACCT TTCATGGAACAAGTTTTCAGGACAAATTCCAGGGCAGATCACAAGGCTGGCGACCTTGCAATACTTGAACCTGTCGCATAACTCTGGTAAGATTCCTTCA AGCACTCAACTTCAGAGCTTGGATCCGTCCAGCTTTGTTGCCAACAAGGAACTCTGTGGGCTTCCATTGAATGAGAGATTCAACACAAAGGATACTGTGC CTGGTTTTGGGGAAGGAAATGAAGATAGTAGTGGTTTATCTTGGTGTTCTGCCAGCATAGTGATTGGGTTTGTGGTTGGGGTTTGGGCAGTAATTGTTCC GTTAGAAGTCAACCTACGTTGGAGATTGTTGTATTTTGGTTTCCTGGACCATGCTGGTATAAAGTTCTGGACATGGTTAAGAAATCGGAGCTGA
AA sequence Show only first row Show all	>Lus10039522 pacid=23164994 polypeptide=Lus10039522 locus=Lus10039522.g ID=Lus10039522.BGIv1.0 annot-version=v1.0 MSFTKVHMSVSNVLDILGRCSSKTLKFLALSGCQLFGQLTDRIGNFKRLSRLSLAGNSISGPIPMSFGEMESLSFVDLSGNRINGTIPTSFGKLANLEWA DISINLMEGEIPRSIGALTSLVSLRLQNNSLTGEIPPSFSICSSLVSIDLGDNELKGKIPDWIGESFPRLCINNLHGNKLQGNIPEELCHLQLLQILDLS HNFLSGNLPDCIGNFSAMATSSERDPGGVIYLFFGGAESFVEYQVLVTKWQVKGYSTILNYVRSLDLSWNKFSGQIPGQITRLATLQYLNLSHNSGKIPS STQLQSLDPSSFVANKELCGLPLNERFNTKDTVPGFGEGNEDSSGLSWCSASIVIGFVVGVWAVIVPLEVNLRWRLLYFGFLDHAGIKFWTWLRNRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	1.4	0.7764
					Lus10005948 [exp]	2.0	0.7901
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	7.5	0.7594
AT1G17930			Aminotransferase-like, plant m...		Lus10033313 [exp]	9.2	0.6657
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	11.2	0.7122
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	14.5	0.6519
					Lus10004065 [exp]	22.7	0.7152
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10034432 [exp]	24.4	0.6532
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	24.9	0.7464
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	26.5	0.6652

Compare expression of checked genes

Lus10039522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.