Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 103 / 2e-25 disease resistance family protein / LRR family protein (.1) AT3G11080 97 / 5e-23 AtRLP35 receptor like protein 35 (.1) AT3G28890 95 / 2e-22 AtRLP43 receptor like protein 43 (.1.2) AT5G23400 95 / 2e-22 Leucine-rich repeat (LRR) family protein (.1) AT5G27060 94 / 3e-22 AtRLP53 receptor like protein 53 (.1) AT3G05660 93 / 8e-22 AtRLP33 receptor like protein 33 (.1) AT5G21090 89 / 1e-21 Leucine-rich repeat (LRR) family protein (.1) AT3G43740 88 / 2e-21 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G33610 89 / 3e-20 Leucine-rich repeat (LRR) family protein (.1) AT5G01890 89 / 3e-20 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016337 [exp] 194 / 3e-57 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 194 / 6e-57 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 186 / 3e-54 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 179 / 9e-52 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 178 / 3e-51 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 177 / 3e-51 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 177 / 4e-51 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 171 / 4e-49 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 169 / 3e-48 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196832 [exp] 124 / 4e-33 AT2G34930 203 / 8e-57 disease resistance family protein / LRR family protein (.1) Potri.001G027500 [exp] 119 / 1e-32 AT2G34930 130 / 1e-33 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 114 / 3e-29 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 112 / 2e-28 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 105 / 5e-26 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 105 / 5e-26 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 105 / 5e-26 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 104 / 1e-25 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 100 / 2e-24 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 97 / 3e-23 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039523 pacid=23165345 polypeptide=Lus10039523 locus=Lus10039523.g ID=Lus10039523.BGIv1.0 annot-version=v1.0 ATGACAGCTCATGCTGCAGTGCTTCTCCTCTGGCTGAGCTTCATGTGTTTCTGCAATCAAAGTTCTTCTAATGCAGGCCTCCTATGCAATCAGGCTGAAA AAGAAGCCCTATTGAATTTCAAGGCTGATCTCCAAGACCCTTCAAGCCGCCTATCTTCCTGGGTTGCCAGTAATGGCGATTGTTGTAAATGGTCTGGTGT TACTTGTGGCAACATTACTGGCCATGTTACTCGCCTTTTTCTACAATGCCTTCATTGTGGCGAACATACTATGCTTCAAGGTAAGGTAAATCCTTCCTTG CTTGAGTTGAAGCATCTTACTTATCTGGACCTCTCAGGCAACAAAGTTCAAGGGGTTACTATCACAGCGTTTATTGGGTCTATGATCAGTTTGACTTCTC TTTTCCTTGATGGATCTGAATTTGGGGGTCTTATCCCACATCAGCTAGAAATCTCTCAAATCTGCAACAACTCAGTCTTCAGCTTGACATCTCTGGATCT AGGAGCAAACAGTTTCATAGGTCCAATCCCTGATAAGCTGCAAACCCTTACCTCTCTAAGGACTCTTGATATGTCTTCCAACGAGTTCAATGGTTCCATA CCAAGCTGGCTGTTCGGTTTCCACCTCTTGAGGGCCTTGATTTAA
AA sequence Show only first row Show all	>Lus10039523 pacid=23165345 polypeptide=Lus10039523 locus=Lus10039523.g ID=Lus10039523.BGIv1.0 annot-version=v1.0 MTAHAAVLLLWLSFMCFCNQSSSNAGLLCNQAEKEALLNFKADLQDPSSRLSSWVASNGDCCKWSGVTCGNITGHVTRLFLQCLHCGEHTMLQGKVNPSL LELKHLTYLDLSGNKVQGVTITAFIGSMISLTSLFLDGSEFGGLIPHQLEISQICNNSVFSLTSLDLGANSFIGPIPDKLQTLTSLRTLDMSSNEFNGSI PSWLFGFHLLRALI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	1.4	0.7764
					Lus10026392 [exp]	6.6	0.7333
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	13.0	0.7258
					Lus10004065 [exp]	13.9	0.7267
					Lus10038304 [exp]	17.0	0.6701
					Lus10005948 [exp]	20.1	0.6816
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	21.9	0.6696
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	23.0	0.7056
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	36.7	0.6113
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	37.2	0.7240

Compare expression of checked genes

Lus10039523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.