Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12350 1190 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 1135 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 850 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 770 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 766 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 735 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 723 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 609 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 485 / 5e-155 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 181 / 2e-49 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024157 [exp] 1688 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 1171 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 1105 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10016335 [exp] 1035 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 1032 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 796 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 794 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 784 / 0 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 750 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026900 [exp] 1261 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1236 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1235 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 1214 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 1167 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 823 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 768 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 757 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 534 / 6e-173 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 530 / 4e-171 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10039525 pacid=23165304 polypeptide=Lus10039525 locus=Lus10039525.g ID=Lus10039525.BGIv1.0 annot-version=v1.0 ATGATGTTTCCTACTGATAGAGTGGCTGCGGCTGCTGAACAGTCAAGAGCGGGTCCTATGGAGAGAGACGTTGAGTTGGCAATCACTGCTCTTAAAAAGG GATCTCAACTTCTGAAGTATGGACGCAGAGGAAAACCGAAGTTTTGTCCCTTCAGGCTGGCTAATGATGAATCTACTCTGATATGGTTGGCAGATAAAGA GGAGAAGCATCTTAAACTTAGCTATGTTTCTAGAATTGTCCCTGGTCAGCGTACACCAATATTTCAGAGATATCCTCGACCAGAAAAGGAATATCAGTCG TTCTCTCTGATATATCATGAACGGTCTCTGGATGTGATATGTAAGGACAAGGATGAAGCTGAAGTATGGATTACTGGTCTGAAAGCACTAATACAACGTA TCAAGAAGCGAAGAGATGAATCTCGGAGCGATGGGATCATGTCTGGAACAACTAGTCCAAAAGGACAGACTCAGAGAAGTTCTCCTTTGAGTTCTGCCTT TGATAGTGCTGACGGTTCACAGAAGGACGAAGTGGATCCTTTTCGCCTATGTATTCCCTATGACAGTCCTTCCAAGATTGGGTTGGAGAAGGAACTATCT GAAGTTATGTCATATCCTCTGCCTCCCAGGGCTTTCTTTCTTCCAGAATCTTCTGGTGGATCCGTTCATTCTCTGTCATCAGGGGGCTCAGATGGAATTG TTGGGCGTATGAAGGGTATGACTGTAGATACGTTTAGAGTGAGCTTATCAAGTGCTGTCAGTTCCTCAAGCCAAGGTTCTGGTCATGATGACAGTGATGC ATTAGGTGATGTATATATGTGGGGAGAAGGAACTGGAGATGGCATTTTGGGTGGTGGAGTGCACAGAGTTGGTGATTCAGGCCTTGCAATGGACTCTTTT GTTCCAAAACCCTTGGATTCTGCAGTCATATTGGATGTTCAAGCTATAGCTTGTGGTAGGCATCATGCTGCTCTAGTGACAAGACAAGGAGAAGTTTTCA CTTGGGGTGAGGAACTTGGTGGCAGACTTGGACATGGTATAGATTCTAATGTCTTACATCCTAAGCTTTTAGATGGGCTTAAAAACATCAATGTTGAGCT AGTTGCTTGTGGAGAGTATCATTCCTGTGCAGTATCCCTCTCCGGCGACCTGTACCTTTGGGGTAATAGTGCATCCAGTCTGAAGCTCGATGGATATGGA ACTGAAGTAAGTCAATGGGCTCCAAGAAAGGTAAATGGGCCTCTGGAAGGGATCCCTGTGTCTTCAGTTTCATGTGGACCTTGGCACACTGCTGTCGTAA CTTCAGCAGGTCAATTGTTCACTTTTGGAGATGGAACCTTTGGAGTTTTAGGACATGGTGACCGTAAAAGTATGTCCATGCCACGGGAAGTGGAGTCCCT TAAGGGCCTCCGAACAATTCGAGCAGCATGTGGTGTATGGCACACTGCTGCAGTTGTAGAAGTAATGGTTGGATCTTCCAGTACGAACAATTGCTGTTCA GGGAAGCTATTCACCTGGGGAGATGGAGATAAAGGTCGTCTAGGCCATGGTAATATGGAGGCAAAACTGGTCCCAACCTGTATGGCTGCTCTTGGTGATT CTAACTTCTGTCAAGTTGCCTGTGGACACAGCATGACTGTTGCACTTACAACCACAGGACATGTTTACACGATGGGAAGCCCTGTATATGGTCAGCTAGG GAGTCCTCAAGCTAGCGTCAACGCACCAACTCGTGTAGCGGGGAAACTTACTAATAATTTTGTTGAGGAATTGGCATGTGGTGCCTTTCATGTTGCTGTT TTAACTTCGAAGACTGAGGTTTATACTTGGGGAAAAGGTGCAAATGGTCGATTAGGACATGGTGATACAGATGATAGGAATTCTCCAACGTTAGTTGAAG CTTTGAAGGATAAACAGGTCAAGAGTATTGTCTGTGGTACTAGTTTGACAGCAGCTATTTGTCTTCACAAATCAGTATCAGGTGTTGATCAATCAATGTG CTCTGGTTGCCGCCTACCATTTAATTTCAAAAGGAAACAACATAACTGCTATAACTGTGGCCTTGTCTTTTGCCATTCTTGCAGTAGTAGAAAGTCTCTA AAGGCTGCAATGGCACCAAATCCAAACAAAACCTATCGTGTCTGTGACCATTGCTATGGGAAACTTAGAAAAGCTACTGAAAGCGAGCCATCATCTCAGT CCAATCTAAGTAGAGGAATTGTTGGCCAGGGCGGAAATGAAGCTATTGGGAGGAGGGAAACTATGGCTTCAAAGCCGCACATGCATCTCAGACGAAAATT TTCTCTCGAGTCAACTATAGACGTGGAAAGTGGATTTAACAGAAGAAATAAGAAACCGAGTTCCACTAGCACCCAAGTTTCCCCCACTGCAACCGGCTAT AAACACAACCCTTTCCATAACTCCAAGTCGTTTGGATCATCCAAGAAATTTTTCTCTGCTTCGCTTCCTGGATCAAGAATTGTGTCTAGAGCAACATCAC CGACATCAAGACGATCCAGTCCTCCCCGTGCTACAACTCCGTCTCCAGTTCTTGCCAAACATGCAGTGCCAAGTGTTGGTGTAGACGAGGCTAAAAAGAT AAATGATGGCTTGAGTGGAGAAGTTTCTAAATTAAGAGCACAGGTTGAAGAGCTCACTTGCAAAACTCGGGTTCAGGAGGATGAACTGCAAAGAGTAACT GGACAGCTGAAGGAAGCTATTGCTTCAGCGGAGGAGCAAAGTGCAAAATGTAAAGCAGCCAAGGAAGTAATTAAATCACTTACTGCTCAACTTAAGGATG TAGCTGAAAGATTGCGAGAAACGACTGGCAGGAGTAAGAACAGAATTTCAAAAATTGAACCCTGCCAGAAGGATGAATGGGTTGAAGAAGATGAACCCGG TGTCTATATCACGCTAGTATTGTTGCCTGGAGGCGCCAAAGATCTAAAGCGAGTTCGGTTCAGCCGAAAGCGGTTCAGCGAGAAGCAAGCAGAACAATGG TGGGCAGCAAACAGGGCGAGAGTGTATCAGCAATACAATGTTCCGATGGAAGAGAAACCAGGTGTCGGAATTAGGAAAGACGGCTGA
AA sequence Show only first row Show all	>Lus10039525 pacid=23165304 polypeptide=Lus10039525 locus=Lus10039525.g ID=Lus10039525.BGIv1.0 annot-version=v1.0 MMFPTDRVAAAAEQSRAGPMERDVELAITALKKGSQLLKYGRRGKPKFCPFRLANDESTLIWLADKEEKHLKLSYVSRIVPGQRTPIFQRYPRPEKEYQS FSLIYHERSLDVICKDKDEAEVWITGLKALIQRIKKRRDESRSDGIMSGTTSPKGQTQRSSPLSSAFDSADGSQKDEVDPFRLCIPYDSPSKIGLEKELS EVMSYPLPPRAFFLPESSGGSVHSLSSGGSDGIVGRMKGMTVDTFRVSLSSAVSSSSQGSGHDDSDALGDVYMWGEGTGDGILGGGVHRVGDSGLAMDSF VPKPLDSAVILDVQAIACGRHHAALVTRQGEVFTWGEELGGRLGHGIDSNVLHPKLLDGLKNINVELVACGEYHSCAVSLSGDLYLWGNSASSLKLDGYG TEVSQWAPRKVNGPLEGIPVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSMSMPREVESLKGLRTIRAACGVWHTAAVVEVMVGSSSTNNCCS GKLFTWGDGDKGRLGHGNMEAKLVPTCMAALGDSNFCQVACGHSMTVALTTTGHVYTMGSPVYGQLGSPQASVNAPTRVAGKLTNNFVEELACGAFHVAV LTSKTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIVCGTSLTAAICLHKSVSGVDQSMCSGCRLPFNFKRKQHNCYNCGLVFCHSCSSRKSL KAAMAPNPNKTYRVCDHCYGKLRKATESEPSSQSNLSRGIVGQGGNEAIGRRETMASKPHMHLRRKFSLESTIDVESGFNRRNKKPSSTSTQVSPTATGY KHNPFHNSKSFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRATTPSPVLAKHAVPSVGVDEAKKINDGLSGEVSKLRAQVEELTCKTRVQEDELQRVT GQLKEAIASAEEQSAKCKAAKEVIKSLTAQLKDVAERLRETTGRSKNRISKIEPCQKDEWVEEDEPGVYITLVLLPGGAKDLKRVRFSRKRFSEKQAEQW WAANRARVYQQYNVPMEEKPGVGIRKDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	1.4	0.9439
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	1.4	0.9441
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	3.0	0.9343
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	5.9	0.9301
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	6.5	0.9211
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	6.6	0.9327
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	7.5	0.9100
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023015 [exp]	7.6	0.8871
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10025721 [exp]	10.6	0.8877
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	15.2	0.9031

Compare expression of checked genes

Lus10039525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.