Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54460 443 / 7e-137 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) AT1G02670 76 / 9e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05120 76 / 1e-13 Helicase protein with RING/U-box domain (.1) AT5G43530 74 / 5e-13 Helicase protein with RING/U-box domain (.1) AT1G50410 72 / 2e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 71 / 3e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61140 71 / 4e-12 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT5G22750 69 / 1e-11 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G11100 66 / 2e-10 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT5G05130 65 / 3e-10 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024159 [exp] 1026 / 0 AT3G54460 584 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10024158 [exp] 549 / 0 AT3G54460 833 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10011211 [exp] 78 / 2e-14 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10043365 [exp] 77 / 8e-14 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041008 [exp] 76 / 2e-13 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018465 [exp] 75 / 3e-13 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10030044 [exp] 74 / 3e-13 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10013452 [exp] 74 / 4e-13 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041156 [exp] 69 / 1e-11 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197701 [exp] 573 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.T125006 [exp] 573 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.003G083400 [exp] 76 / 7e-14 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 74 / 3e-13 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 73 / 6e-13 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G189400 [exp] 72 / 2e-12 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.004G037700 [exp] 70 / 7e-12 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.006G035700 [exp] 69 / 2e-11 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.011G046400 [exp] 67 / 4e-11 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.006G047100 [exp] 57 / 9e-08 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039526 pacid=23164996 polypeptide=Lus10039526 locus=Lus10039526.g ID=Lus10039526.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAAGAGGATCCGTTCCCCGGTCACAAGCTCTGCGGTTATCTATGTGCTGTTCTCTCAGCTCCCTCGCCGGAGGACTTCCTGGCGTCTTCTT CGCTTCCCTTTTTATCTCCATGCCGCGCCTTCTCTGACGGAGCCCGAGTCGGCTTCGTGACTGGGCAAGATAACGTTTTCCTGTCAACAGTTGCGAGACT TGTTCCGCAGGAAACTGTGGCAGTGGTTGCTGAGAACACGGAAATCAGCTACGAAAATAGGAGTGGGAGTTCAGGGAGGAGAAAGAGCAGAGGCAAAATC GGGGGATGTATGAGTCGGAATGAGTCCAGGACGAAGAGGAAGATAGTGAGAGGGATCGGGATGGTGAATGGGAGTTTGAGCGTTGTTCATCAGATTCATT CTCTGGTTACGCATAAGTGTGTGCAGGCCGATGCTCGAGTTTTGCAGGTTGAAGTTCGGGAGAGTGATTGCGATGTGAGAGTTGTGGTGCTGGTGGATGT GTATCTGCCTATTGCGCTGTGGTCCGGATGGCAGTTCCCCAGATCAGGGCCGGTTGCCGGTCCTCTGTTCCGGCACTTCAGCTGTGATTGGACGAAGAGA AGTCTAATGCTTGCTAATCGAAGATCACACGTTGGAGATAGCAGTATTTGGAATGTCTCCTCTTGCCATGTTCTTGACTGCAAGGTACACTGTGAGGTCT CTGATTCTTCTTCTTCTTCTTCTTCCAAGACGAATCATTTTGGACTACATGAGATTTTTACGAGTCTGCCTAGTTTGGCGAGTAGGGATAGCTACGGTTC TTTGAGAATGGAACCAGCAGATAATTATCATGGTCCGAGTATTTGGGATGTTGCAGAAGATGTTCTGATAAATATTTTATCAGCTCTTAGCCCATCGGAT CTTGTTAGAGTTGCTGCTATCTGTCGTTGCTTGAGATTACTGGTTGTATGTGTCATGACGTATATGAAACTTAAATTATTTCCTCATCAACGTGCTGCTG TTGAGTGGATGTTAGAGAGGGAGGTGAATGACCGATATCTCCCACATCCTTTGTTTATGGAATGCTCAACTGAAGATGCGTTTACTTTTTATCTGAACAC AGTCTCTGGTGAGATAGTTGTAGGGCAGGCTCCCTCTGTTAGAGATTTCCGTGGGGGGATGTTCTGTGATGAACCTGGCTTGGGAAAGACCATTACTGCT CTTTCACTTATTCTTAAGACACAAGGAAAACTGGCTGACCCACCCAATGGCGTGCAAATAACATGGTGTAGACATCAAGATGATCAGAGATGTGGCTACT ATGAGCTTAATGGTGGTGACCTTTCCTCTATGAGTACACCATCAGGGAAAAGGCATGTGAACCAGAGTGCTCGGAGGGGTCAATTATCGCTTGATGAGTT CACTCCTGCTAATAATATGCACAACAAGCACGACTTCTGCGAAGAAAAATCTCTTGCTTATGATGAAGCATTAGGTGTTTGTTCGAAAAGAAACGTAGAA AATTCCAAGAAGAGAAAGCGTGGACACCCTCAGATGTCTAATGAGACTTGGGTGCAATGCGATTCCTGCAGAAAGTGGAGGAAGCTTTCAGTTGCCGTGA ATGATGTGGGTGCTGCATGGTTTTGTAGTATGAACGCTGACACAACACATCTAAGCTGTAAAGATCCTGAGGAATCATGGGACAAATCTGAGTCTGTTAC GGACATGCTTGGCTTTCACAGCAAAGGAACTTCTGGGGCGAATGAGCAAAACACATCTTTTTTTATTAACGTTCTCAAGAAGTATCATTCATCAATGAAT GCAAAAACAAAGAAAGCCTTAACGTGGCTAGCTAAACTTCCTGCGGATAGACTCTCTTTAATGGAAACTGTTGGATTGGTCAGTCCAGTTCTAGAATCTG GTTCAGTATCTGATCCCATTTCAGAGGAGTATGCCTTGGTGAAATATTACCTTCAGTTTGGTGGCCACTGTCTCAGTGAAAGGTGTACATCTCTGGGATG TACTCATTTATACGAGATGCAAACTCCATTAACCCGTCCAGAAAATCCAAACCCAAAATGGCCAGTCCCTAAAGATCTGATCGAGTTGCAGCCATCGTAC AAACAGGATGACTGGCATCCGGATTGGCAATCGACATCAAGTAGTAAAGTTGCTTACCTAGTGGCCAGGTTGAAAGCTCTGCAAGAGGATAATAAAGCCA GTTGGCATCGTATTTATAAGAAATATGACAGTTTGAACGTAGAAGGACAACAAGGTGACCCTCAGTTAGTAAGTGGTTCGACCGGAGAGGAAGACTGCAA TTCTACAGCTTGCAGGCTCGTCCAAGATAAAGTGATAATATTTTCTCAGTTTCTAGAACATATACATGTCATTGAACAGCAGTTAACATTGGCTGGCATC AAGTTCGCTGGGCTTTACAGTCCCATGCATTCTCATAACAAGGTGAAATCACTGGCCACACTCCGGAATGATATGGAGTGTGTAGCTCTGCTAATGGACG GAAGCGCTGCATTAGGCCTTGACTTGAGCTTTGTATCACATGTATTCCTAATGGAACCAATATGGGATAGGAGCATGGAGGAACAAGTGGTAAGTCGTGC TCACCGTATGGGTTCCACTCGCCCAATTTATGTTGAAACTTTAGCTATGCGCAGTACGATTGAAGAGCAAATGGTGGACTTTCTCCAGGGTGCTAATAAC TCGGATGAAGGAACCAAGCATTTGAAACAAGAATACGAGGAGAGACCAGCTCAGGAAGGAACTCCTCGGACTCTTCATGACTTTGCGGAGTGCAACTATT TGGCAAAGACTTAG
AA sequence Show only first row Show all	>Lus10039526 pacid=23164996 polypeptide=Lus10039526 locus=Lus10039526.g ID=Lus10039526.BGIv1.0 annot-version=v1.0 MEQEEDPFPGHKLCGYLCAVLSAPSPEDFLASSSLPFLSPCRAFSDGARVGFVTGQDNVFLSTVARLVPQETVAVVAENTEISYENRSGSSGRRKSRGKI GGCMSRNESRTKRKIVRGIGMVNGSLSVVHQIHSLVTHKCVQADARVLQVEVRESDCDVRVVVLVDVYLPIALWSGWQFPRSGPVAGPLFRHFSCDWTKR SLMLANRRSHVGDSSIWNVSSCHVLDCKVHCEVSDSSSSSSSKTNHFGLHEIFTSLPSLASRDSYGSLRMEPADNYHGPSIWDVAEDVLINILSALSPSD LVRVAAICRCLRLLVVCVMTYMKLKLFPHQRAAVEWMLEREVNDRYLPHPLFMECSTEDAFTFYLNTVSGEIVVGQAPSVRDFRGGMFCDEPGLGKTITA LSLILKTQGKLADPPNGVQITWCRHQDDQRCGYYELNGGDLSSMSTPSGKRHVNQSARRGQLSLDEFTPANNMHNKHDFCEEKSLAYDEALGVCSKRNVE NSKKRKRGHPQMSNETWVQCDSCRKWRKLSVAVNDVGAAWFCSMNADTTHLSCKDPEESWDKSESVTDMLGFHSKGTSGANEQNTSFFINVLKKYHSSMN AKTKKALTWLAKLPADRLSLMETVGLVSPVLESGSVSDPISEEYALVKYYLQFGGHCLSERCTSLGCTHLYEMQTPLTRPENPNPKWPVPKDLIELQPSY KQDDWHPDWQSTSSSKVAYLVARLKALQEDNKASWHRIYKKYDSLNVEGQQGDPQLVSGSTGEEDCNSTACRLVQDKVIIFSQFLEHIHVIEQQLTLAGI KFAGLYSPMHSHNKVKSLATLRNDMECVALLMDGSAALGLDLSFVSHVFLMEPIWDRSMEEQVVSRAHRMGSTRPIYVETLAMRSTIEEQMVDFLQGANN SDEGTKHLKQEYEERPAQEGTPRTLHDFAECNYLAKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	2.2	0.8985
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	2.8	0.8778
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	3.0	0.8711
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	7.2	0.8179
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	7.5	0.8663
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	8.4	0.8474
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	10.8	0.8399
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	13.3	0.8463
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	14.4	0.8460
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	14.5	0.8391

Compare expression of checked genes

Lus10039526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.