Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 427 / 2e-134 disease resistance family protein / LRR family protein (.1) AT4G20140 291 / 2e-82 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 285 / 5e-82 AtRLP50 receptor like protein 50 (.1) AT3G11010 285 / 5e-82 AtRLP34 receptor like protein 34 (.1) AT3G11080 280 / 6e-80 AtRLP35 receptor like protein 35 (.1) AT5G44700 276 / 1e-77 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G05660 270 / 6e-77 AtRLP33 receptor like protein 33 (.1) AT2G15080 271 / 1e-76 AtRLP19 receptor like protein 19 (.1.2) AT5G27060 268 / 7e-76 AtRLP53 receptor like protein 53 (.1) AT1G71400 264 / 6e-75 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039531 [exp] 1723 / 0 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1113 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1110 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1092 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1073 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1061 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1049 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1038 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1034 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 563 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 533 / 5e-174 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 533 / 7e-174 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 512 / 3e-166 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 507 / 2e-164 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 505 / 8e-164 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 499 / 1e-159 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 493 / 6e-159 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 478 / 1e-158 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 486 / 3e-154 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039529 pacid=23165153 polypeptide=Lus10039529 locus=Lus10039529.g ID=Lus10039529.BGIv1.0 annot-version=v1.0 ATGACTGTTCATACTTTACTGGTTCTACTTTGGCTGAGCTTCATGTGTTTCTTCTTCAATTCAATTTCAGGTGCAATAGTCAGCTGCAATCAAGCTGAAA GACAAGCCCTTTTGAATTTCAAGGCTGATCTCCAAGACCCTTCAGCTCGGCTATCTTCTTGGGCAGCCACCAATGGATCAAATTGTTGTACATGGTCTGG TGTTACATGTGACAACATTACTGGCCATGTCACTATGCTCCATCTGGACTGTCTTCACTGTTTGGAGACATCCAAATTCAAGGGGTTTCTTTGGTCCATG ATGAGCTTGAACTCCCTTTTTCTTGATGCATCTGGATTTGGAGGAGCCATCCCTCATCAACTTGGAAACCTCTCTAATCTGCAACATCTCGGTCTTAAGG CTGCTGACTATTTGCTGTATGATAATAGTTTGCAGTGGCTTTCTGGTCTGCCTTCACTGGAATATCTTGATTTAAGTTATGTTGACCTTACCAATGCTTC AGACTGGTTGACCATGATTAACACTATCCCTCATCTGTCAGAGTTGTATCTGTCAAATTGTCGCATCCGTCATAATCCTCCTTTACCAAAAGTTAACCTG TCATCTTTATCAGTTCTTGATCTGGCTGGCAATGAATTTGGCTCAACTTCTTCATTTGGTAGCTGGCTTTCTCATCGGAAAACACTTAAGTTTTTGAACC TCAACCTAAACTACTTCAGAGGTCCAATCCCTGATGAGCTTCAGAACCTTACCTCCCTCAGATATCTTTCTATGTCAACCAACAACTTCAATGCTTCCTT ACCAGACTGGTTATTCAATTTTCAACATCTCGAGTACCTTGATTTTTCTGGGAGCGAGGTTGTTGGTAAAGTGTCGAACAGAATCGCGAACTTGACATCG CTTGGTTATCTTGACCTTTCGAGGAATACGAATCTTGAGCTTGAAGGAGGGATTCCATTATCATTTAAGCATTTGTGTCATTTGAACACACTCTCCATGT CGTCTGTGAAGGTAAACGCGAGCATATCAGACGTGCTAGATATCCTTGGAGAGTGTCCTTGTACAACACTAGAGGTACTGGTTTTGAATGGTTGCCAAAT GTTTGGTCAGTTAGTTGATGGGATTGGGCAGTTCAAGAGGCTAACTCATCTTTCTCTCAGTGATAATTCCATTTCTGGTCCTATACCGATGTCAATCGGC GAAATGGAATCCTTGAGTTACTTGGATTTTTCGAGAAACCGGATGAACGGGACGATTCCAACTAGTTTTGGGAAACTGGCGAAGTTGGAATGCGTTGATA TTTCAATGAACTCAATTGAGGGTATTTTCGTCCCTGAAATTCACTTTGCCAATCTGGAAAACTTGAATTTTTTCTCTGCATCAGGAAACAAGATAGTCAT GAAAGTTGGACAGGATTGGATTCCTCCCAAGTTACTTTACATACTGAATTTAGATTCCTGGCAGATTGGACCAGACTTCCCAAAATGGATCCGACAAATT CTGGCCCTCGAATCTCTTGATCTCTCTAGCACTGGCATTTCTGAACAAATTCCTGAATGGTTCTTCTGGGAGAAACATTTTCAGTACAGCTATCTCAATT TATCTCACAACCGAATTCCAGGGAAGCTTCCAAGTTATCTCTCTGCTCTAACCCCTCACTCATTCTTTGACTTCAGTTGGAATTTATTGGAAGGTCATCT CCCAGTAATCTCCTCCGGCTTAACAGGTTTGGACCTTTCCAACAATTTTTTCACTGGGAATATGATCAAATTCTTATGTTACAATCCATCTCAGATGAGA GAAACACAGTTTCTTAACCTCGGAGCCAACCTCCTTTCCGGAGAGATTCCAAACTGTTGGAAGAATTGGCCAAAGTTAGAGGTTCTAAGGCTAGCCAGTA ACAACTTCACAGGCAAGATCCCAATGTCAATAGGAGCTTTAAGTTTCCTCAGGTCTTTGCGGATTGAGAACAACAGCTTGAGTGGCGAAATCCCGTTATC GCTTGCGAACTGCTCTAGTCTAGTCTCGATCGACTTTGGCGATAATGGTTTGGAAGGGAACATTCCGAAATGGAGAGCTGAAGGAGGCCTTTCGAACTTG CATATCATCAACTTGCGTGGGAACAAGTTCCAGGGAAGCATTCCTGAAGAGCTTTGTCATCTGCAGCTTCAAATTTTGGACCTTTCTCATAATTTGCTAT CCGGGAACTTGCCAGACTGTATTGGCAATCTCAGTGCAATGTCCAGCTCCAAAACTGACGCCAAAGGAGAAATCTTTTTGTTTTTTGGAAGGGAACAGCT GTTTGTGGAATATCTGTTTCTGGTAACAAAAGGGTATGTTAATGGTTACAATACCATACTGAATTACGTCAGAAGTTTGGACCTTTCCTGGAATAACTTT TCAGGAGAGATTCCAGGGCAGATCACAATGTTGTCGACCTTGCAATACTTGAACCTGTCGCATAACTCGTTTTCAGGAGTAATCCCAAAGGGTATCGCTG CAATGGGATCACTAGAATCCTTGGACTTATCTTGGAACCAAATTTGTGAAGAAATCCCTTCAGGATTGGGAAGGCTGACATTCTTGAATCACCTTAACGT GTCCTACAACAACTTAAATGGCAGGATTCCTTCAAGCACTCAACTTCAAAGCTTGGATCCGTCCAGCTTTGTTGGCAACAAGGAACTCTGCGGGCTTCCA TTGAATGAGAAATGCAACACGAACGATATTATGGCTGGTTTTGGTGAAGGAAATGAAGACAGTAGTGGTTTATCTTGGTGCTCTGGCAACATAGTGATTG GGTTTATGGCTGGGCTTTGGGCAGTCATTATTCCAGTAGCGGTCAACCCACGTTGGAGAATGTTGTATTTTGGTTTCCTGGATCGCGTGGGTATAAAGTT CTGGACATGGTTAACAAGTCGGAGCTGA
AA sequence Show only first row Show all	>Lus10039529 pacid=23165153 polypeptide=Lus10039529 locus=Lus10039529.g ID=Lus10039529.BGIv1.0 annot-version=v1.0 MTVHTLLVLLWLSFMCFFFNSISGAIVSCNQAERQALLNFKADLQDPSARLSSWAATNGSNCCTWSGVTCDNITGHVTMLHLDCLHCLETSKFKGFLWSM MSLNSLFLDASGFGGAIPHQLGNLSNLQHLGLKAADYLLYDNSLQWLSGLPSLEYLDLSYVDLTNASDWLTMINTIPHLSELYLSNCRIRHNPPLPKVNL SSLSVLDLAGNEFGSTSSFGSWLSHRKTLKFLNLNLNYFRGPIPDELQNLTSLRYLSMSTNNFNASLPDWLFNFQHLEYLDFSGSEVVGKVSNRIANLTS LGYLDLSRNTNLELEGGIPLSFKHLCHLNTLSMSSVKVNASISDVLDILGECPCTTLEVLVLNGCQMFGQLVDGIGQFKRLTHLSLSDNSISGPIPMSIG EMESLSYLDFSRNRMNGTIPTSFGKLAKLECVDISMNSIEGIFVPEIHFANLENLNFFSASGNKIVMKVGQDWIPPKLLYILNLDSWQIGPDFPKWIRQI LALESLDLSSTGISEQIPEWFFWEKHFQYSYLNLSHNRIPGKLPSYLSALTPHSFFDFSWNLLEGHLPVISSGLTGLDLSNNFFTGNMIKFLCYNPSQMR ETQFLNLGANLLSGEIPNCWKNWPKLEVLRLASNNFTGKIPMSIGALSFLRSLRIENNSLSGEIPLSLANCSSLVSIDFGDNGLEGNIPKWRAEGGLSNL HIINLRGNKFQGSIPEELCHLQLQILDLSHNLLSGNLPDCIGNLSAMSSSKTDAKGEIFLFFGREQLFVEYLFLVTKGYVNGYNTILNYVRSLDLSWNNF SGEIPGQITMLSTLQYLNLSHNSFSGVIPKGIAAMGSLESLDLSWNQICEEIPSGLGRLTFLNHLNVSYNNLNGRIPSSTQLQSLDPSSFVGNKELCGLP LNEKCNTNDIMAGFGEGNEDSSGLSWCSGNIVIGFMAGLWAVIIPVAVNPRWRMLYFGFLDRVGIKFWTWLTSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10039529 [exp]	0	1
					Lus10021893 [exp]	1.0	0.7561
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	4.0	0.6559
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	10.1	0.6514
					Lus10042250 [exp]	12.2	0.5895
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	14.7	0.6176
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	15.9	0.5893
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	22.2	0.5606
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	23.2	0.5606
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	23.7	0.5954
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10038796 [exp]	23.8	0.5278

Compare expression of checked genes

Lus10039529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.