Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) AT4G20140 296 / 3e-84 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 276 / 6e-79 AtRLP50 receptor like protein 50 (.1) AT5G44700 272 / 9e-76 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 267 / 4e-75 AtRLP19 receptor like protein 19 (.1.2) AT1G07390 266 / 2e-74 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 264 / 9e-74 AtRLP9 receptor like protein 9 (.1.2) AT4G04220 258 / 6e-73 AtRLP46 receptor like protein 46 (.1) AT1G47890 259 / 2e-72 AtRLP7 receptor like protein 7 (.1) AT1G45616 258 / 7e-72 AtRLP6 receptor like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039529 [exp] 1679 / 0 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1152 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1142 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1112 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1096 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1093 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1088 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1054 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1040 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 589 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 551 / 1e-180 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 548 / 1e-179 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 541 / 2e-177 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 538 / 4e-176 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 530 / 3e-171 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 526 / 2e-169 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 520 / 3e-169 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 514 / 2e-165 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 496 / 3e-160 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039531 pacid=23165136 polypeptide=Lus10039531 locus=Lus10039531.g ID=Lus10039531.BGIv1.0 annot-version=v1.0 ATGTGTTTCTTCTTCAATTCAATTTCAGGTGCAATAGTCAGCTGCAATCAAGCTGAAAGACAAGCCCTTTTGAATTTCAAGGCTGATCTCCAAGACCCTT CAGCTCGGCTATCTTCTTGGGCAGCCACCAATGGATCAAATTGTTGTACATGGTCTGGTGTTACATGTGACAACATTACTGGCCATGTCACTATGCTCCA TCTGGACTGTCTTCACTGTTTGGAGACATCCAAATTTAAGGGTAAGATAAATCCTTCCTTACTTGAGTTGAAGCGTCTTACTTATTTGGACCTATCAGAC AACAATTTTCAAGGGATTCCAATTCCAGGGTTTCTTGGGTCCATGATAAGCTTGAACTCCCTTTTTCTTGATGCATCTGGGTTTGGAGGAGCCATCCCAC ATCAGCTTGGAAACCTCTCTAATCTGCAACATCTCAGTCTTAAGGCTGCTGACTATTTTCTGTATGATAATAGTTTGCAATGGCTTTCTGGTCTGCCTTC ACTGGAATATCTAGATTTAAGTAATATTGACCTTACCAATGCTTCAGACTGGTTGACCATGATCAACACTATCCCTCATCTGTCAGAACTGTATTTGTCA AATTGTCACATCAGTCACAACCCTCCTTTACCAAAAGTTAACCTGTCATCTTTATCAGTTCTTGATCTGGGTGTCAATGAATTCGGCTCGACTTCTTCAT TTGCTAGCTGGCTTTCTCATCTGAAAACACTAACGTATTTGGACCTAGCACTAAACTACTTCAGAGGTCCAATCCCTGATGAGCTTCAGAACCTTACCTC CCTCAGATCTCTTTCTATGTCAGCTAACATCTTCAACGCTTCCATACCAAACTGGTTGTTCAATTTCCAACATCTCGAGCATCTCGATTTTTCGGGGAGC GAGGTGGTTGGTAAAGTGTCGAACGGAATCAAGAACCTTACATCGCTTGTTTATCTCGACCTTTCGATGAATAGCAATCTCGAACTTGAAGGAGGGATTC CATCAGCATTCAAGCATCTGTGTCATTTGAACACGCTCTCGATGTCGTCTGCTAAATTAAACGCAAGCATATCAGATGTGCTAGATATCCTTGGAGGGTG TCCTTGTACAACACTAGAGGTACTGTATTTGAATGGTTGCCAACTGTTTGGTCATTTGGTTGATGGGATTGGGAAGTTGAAGAAACTCAGTTATCTTTCT CTCAGTGACAATTCCATTTCCGGTCCTATACCGATGTCAATTGGAGAAATGGAATCCTTGAGTTACGTGAACTTGGCAAGAAACTGCATTAATGGAACGA TTCCGACTAGTCTTGGGAAACTGGCGAAGTTGGAATGGGTTGATATTTCTATGAACTCAATGGAGGGTGTTTTTTTACCTGAAATTCACTTTGCCAATCT GGAAAACTTGACTTGTTTCTCTGCATCAGGAAACAAGATGGTCATGAGAGTTGGACATGATTGGATTCCTCCCAAGTTGCTTTACATACTGCACTTGGAT TCCTGGAACATTGGACCTTACTTCCCCGAATGGATCCGGCAAATTCTGGCCCTCGAATCGCTTGATCTTTCTAGCACTGGTATTTCAGAACAAATTCCTG AATGGTTCTTCTGGGAGAATCATTTTCAGTATGGCTATCTGAATTTATCTCACAACAGAATTCCTGGGAAGCTTCCGAGTTATCTCTCTGCTATAACCCC TGACTCATTATTTGATTTCAGTTGGAATTTATTGGAAGGTCAACTCCCAGTAATCTCCTCCGACTTAACAGGTTTGGACCTTTCCAACAATTTCTTCACT GGGAACATGTTCAAATTCTTATGCTACAATCCATCTCAGATGAGGGAAACACAGTTTCTTAACCTCGGAGCCAACCTCCTTTCCGGAGAGATTCCAAACT GTTGGAAGAATTGGCCAAAGTTAAAGGTTCTAAGACTGGCCAGTAACAACTTCACAGGCAAGATCCCAATGTCAATTGGAGCTTTAAGTTCCCTCAGGTC TTTGCGGATTGAGAACAACAGCTTAAGTGGCGAAATCCCATTATCGCTTGCGAACTGCTCTAGTCTACTCTCGATCGACCTTGGAGATAATAGTTTGGAA GGAAATATTCCGAAATGGATAGCTGAAGAAGGCCTTGCAAACTTGCAGATCATCAATTTACGAGGGAACAAGTTTCAGGGAAGCATTCCTGAAGAACTTT GTCATCTGCAGCTTCTGCAAATTTTGGACCTTTCTCATAACTCGCTATCCTGGAAATTGCCGGACTGTATTGGAAATTTCAGTGCAATGTCCAGCTCCAA AACTGACGCCCAAGGAGAAATCTTTGTGTTTTACGGAAGGGAGCAGCTGTTTGTGGAATACCTGTTTCTGGTGACAAAAGGGCAGGTTAATGGTTACAGT ACCATACTGAATTACGTCAGAAGTTTGGACCTTTCATGGAATAACTTTTCAGGAGAGATTCCAGGGCAGATCACAAGGCTATCGACCTTGCAATACCTGA ACCTGTCGCATAACTCGTTTTCAGGAGTAATCCCGAAGGGTATCGCTGCAATGGGATCACTAGAATCCTTGGACTTATCTTGGAACCAAATTTGTGAAGA AATCCCTTCAGGATTGGGAAGGCTGACATTCTTGAATCACCTTAATGTGTCCTATAACAACTTAAATGGTAGGATTCCTTCAAGCACTCAACTTCAAAGC TTGGATCCGTCCAGCTTTGTTGGCAACAAGGAACTCTGCGGGCTTCCATTGAATGAGAAATGCAACACGAACGATATTATGGCTGGATTTGGTGAAGTAA ATGAAGATAGTAGTGGTTTATCTTGGTGCTCTGGCAACATAGTGATTGGGTTTATGGCTGGGCTTTGGGCAGTCATTATTCCAGTAGCGATCAACCCACG TTGGAGATTTTTGTATTTTGGTTTCCTGGATGATATGGGCATAAAGTTCTGGACATGGTTAAGAAGACGGAGCTGA
AA sequence Show only first row Show all	>Lus10039531 pacid=23165136 polypeptide=Lus10039531 locus=Lus10039531.g ID=Lus10039531.BGIv1.0 annot-version=v1.0 MCFFFNSISGAIVSCNQAERQALLNFKADLQDPSARLSSWAATNGSNCCTWSGVTCDNITGHVTMLHLDCLHCLETSKFKGKINPSLLELKRLTYLDLSD NNFQGIPIPGFLGSMISLNSLFLDASGFGGAIPHQLGNLSNLQHLSLKAADYFLYDNSLQWLSGLPSLEYLDLSNIDLTNASDWLTMINTIPHLSELYLS NCHISHNPPLPKVNLSSLSVLDLGVNEFGSTSSFASWLSHLKTLTYLDLALNYFRGPIPDELQNLTSLRSLSMSANIFNASIPNWLFNFQHLEHLDFSGS EVVGKVSNGIKNLTSLVYLDLSMNSNLELEGGIPSAFKHLCHLNTLSMSSAKLNASISDVLDILGGCPCTTLEVLYLNGCQLFGHLVDGIGKLKKLSYLS LSDNSISGPIPMSIGEMESLSYVNLARNCINGTIPTSLGKLAKLEWVDISMNSMEGVFLPEIHFANLENLTCFSASGNKMVMRVGHDWIPPKLLYILHLD SWNIGPYFPEWIRQILALESLDLSSTGISEQIPEWFFWENHFQYGYLNLSHNRIPGKLPSYLSAITPDSLFDFSWNLLEGQLPVISSDLTGLDLSNNFFT GNMFKFLCYNPSQMRETQFLNLGANLLSGEIPNCWKNWPKLKVLRLASNNFTGKIPMSIGALSSLRSLRIENNSLSGEIPLSLANCSSLLSIDLGDNSLE GNIPKWIAEEGLANLQIINLRGNKFQGSIPEELCHLQLLQILDLSHNSLSWKLPDCIGNFSAMSSSKTDAQGEIFVFYGREQLFVEYLFLVTKGQVNGYS TILNYVRSLDLSWNNFSGEIPGQITRLSTLQYLNLSHNSFSGVIPKGIAAMGSLESLDLSWNQICEEIPSGLGRLTFLNHLNVSYNNLNGRIPSSTQLQS LDPSSFVGNKELCGLPLNEKCNTNDIMAGFGEVNEDSSGLSWCSGNIVIGFMAGLWAVIIPVAINPRWRFLYFGFLDDMGIKFWTWLRRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10039531 [exp]	0	1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	12.2	0.7751
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	30.5	0.7354
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10008588 [exp]	31.0	0.6855
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	39.7	0.7267
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	47.7	0.6974
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	105.9	0.6347
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	108.8	0.6749
AT2G27550		ATC	centroradialis (.1)		Lus10019518 [exp]	119.0	0.6511
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	122.9	0.6499
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	186.0	0.6307

Compare expression of checked genes

Lus10039531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.