Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1252 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1248 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1235 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1204 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1190 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT2G36910 1011 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 970 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G02520 938 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT5G46540 932 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G25960 929 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024162 [exp] 2449 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1485 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1389 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039458 [exp] 1260 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1259 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1250 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1038 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 1030 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 985 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G133800 [exp] 1519 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1490 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1268 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1267 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1255 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1219 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1197 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1127 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1098 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.016G093600 [exp] 1028 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10039533 pacid=23165151 polypeptide=Lus10039533 locus=Lus10039533.g ID=Lus10039533.BGIv1.0 annot-version=v1.0 ATGGTGGGAAACGGGAAAGGCCGCCTTTTTCGCCACAAGGATCCGGTGGACATGGCGTTGATGCTGCTTGGAACACTGGGGAGCATTGGGGATGGATCCA TGACTCCACTTACTATGTACATTTTGAGTTCTGTCATCAATGACTATGGTGGCTCTCAGTTGGCTGGCTCTGACAAAACCGTTGAAAAGTATGCTTTGAG GTTGCTGTTCCTCTCCTTCCTAGTTGGTGCATCAGCTTTCTTAGAAGGAGTTTGTTGGACAAGAACAGCTGAGAGGCAGACATCTCGTATGAGAATTGAG TACCTTAAAGCAGTACTAAGACAGGAAGTTGGATTCTTTGATGGAGAATCTGCTACTTCTAGTACTTTCCAAGTCATCTCTGTCATCTCTTCTGATGCTC ATTTGATCCAGGACACCATAGCTGAAAAGATACCAAACTGCCTGACTCATCTCACATCATTCATCGCGAGCATTGTGGTTTCCTTCTTGCTGTCGTGGCA ACTGGCTATATCAGCATTGCCATTCGCGGTCTTGTTTATCGCGCCAGGACTTGGGTTTGGGAAGCTGCTGATGAAACTAGGAGGGAAAGCCAAAGAAGCA TACGAAGTAGCTGGCGGAATTGGTGAGCAAGCAATCTCCTCGATCCGGGTTGTTTACTCGTATGTTGGAGAGGTCCAAACCTTGGAGAGATTCAGCAATG CACTTGAGAGGAGCTTGAAAATTGGGATCAAACAAGGCTTGACTAAAGGATTGCTGCTTGGAAGCATGGGGATAGTTTATGGAGCTTGGGCCTTCCAAGC TTGGGTTGGAAGTTATCTGGTCACCGAAAAGGGCCAAAAGGGCGGTGCTGTTTTCGTCGCAGGCGCCTGTATCATCATTGGAGGAGTGTCAATTATGAAT GCACTTCCCAATCTTTCATTCATCTCACAGGCATTTCTGGCTTCTTCAAGGATCAATGAAATGATTGACAGAATCCCATCTATAGATTCTGAAGACGACG AGAACAACAACAAGGTCCTGCCACGAGTGAAAGGCGACATCGACTTCCAGGATGTTCATTTCAGCTACCCATCTAGACCAGATTCTCTGGTTCTCAATGG ATTCAGCCTTGGAATTCATCATGGAGAAACTGTGGCTCTTGTCGGAGGAAGTGGTTCAGGAAAGTCCACTGTCATTGCATTGCTGGAGAGGTTCTATGAT CCTGTGGAAGGCAGCATTTTCCTTGATGGTTATGACATAAAGACACTTGAGCCTATATGGTTAAGATCCCAGATGGGGCTGGTGAATCAAGAACCAATTC TTTTCGCAACGACCATTCATGAGAACATTCTGTTTGGCAATGAAGAAGCCACTGAGAAACATGTTGAAAAAGCAGCAATGGCTGCAAATATACATGACTT CATCGTCAAGTTACCTAATGGATACCAAACACAGGTGGGACAATTTGGATTCCAGCTTTCCGGAGGGCAGAAGCAAAGGATAGCCATAGCAAGAGCTTTG ATTAGAAATCCCAAGATTCTTCTTCTAGATGAAGCCACAAGTGCATTGGATGCAGAATCTGAGAAGGTAGTCCAAAGTGCTTTGGATAAAGCCTCGGTGG GGAGGACAACAATCATCGTTGCTCATCGCCTGGCAACTGTACGAAAGGCCGACTTGATAGTGGTACTTCAATCTGGGAACATTGTTGAATCAGGTAGCCA TGGTGAGCTGATTGAGTTGAACAATGGGGAAGATGGAGCTTACAACAAAATGTTGAGATTGCAGCAATCAGCAGATCAAAGACCAGGCGAACATGGTCAA AATAGAATCATCATGACTCCTCATCCTCCGCAGACTCCAGTAAGTGGATCAAGCTGTGAAGGTAGCCCACATGCCTTGAGCCCAGTTTTCTCTGTAAATC TGGTAACTCCAGTCCAAACATACATCCACCATCAAAATGACAGGAACAATAAAAACAAGTCAATATCATCCTCTCTTCCACCTTCTCAATGGAGGCTGCT GAGAATGAATGCTCCCGAATGGAAGAGAGGGTTACTCGGCTGCATAGGATCTGCAGTGGTCGGAGCAATTCAGCCAGCTCATGCATTTTGTTTAGGATCA GCTCTGTCAGTATACTTCTCTGGAGACAATAGTTACATCAAATCAGAAACCATAACTTACTGCCTACTATTCGTAAGCTTCGCAGTTCTCAGCTTCACTT TCAACATCGTCCAGCATTATAACTTCGCAATCATGGGGGAGAAGCTAGTCAAAAGGGTACGCGAGAAGATGGTGGAAAAAATGCTCACCTTTGAGATCGG TTGGTTTGATCAAGAAGAGAACACAAGTGCTGCAATTTGTGCTCAGATAGCCAATGAAGCACAGCTGGTCCGGTCTCTAGTCGGAGATCGAATGTCGTTG CTGATTCAGATATGTTTCAGTGCTTCCATTGCCTTTATTGTCAGTCTGGTTGTCACATGGAGACTATCAATCGTCATTATAGTCATCCAGCCATTAATCA TTGGAAGCTTTTACTCAAGAAGCGTGCTGATGAAGAAAATGTCCGAAAAGGCTCGATCGGAGCAACGAGAGGGAAGTCAATTAGCCAGTGAAGCAATCAT CAACAATAGAACCATCACTGCCTTTTCATCTCAGAGGAGGATATTAGGATTGTTTGCAAAAACCATGGAAGGACCCAAGAAGGAGATTGTTAAACAGTCA TGGATTTCAGGTTTCGGGATGTGTTGTTCCCAATTCCTGACCACTGCATCCATGGCACTAACTTACTGGTATGGTGGTAAGTTATTGATTCAAGGATTGA TTACCCCAAAACACCTTTTCCAGGCGTTCTTCCTTCTGATGAGTACTGGTAAGAACATAGCTGATGCTGGAAGCATGAGTACTGATATAGCCAAAGGTGG TGATGCCATCAGATCAGTCTTTGAAACACTGGACAGGGAAACTGAGATCGATCCAGACGACCCGGAAGGGAAAAAAGTGAGGAAACAAGTTAAGGGAAAG ATTGAGCTTGACAAGATATTTTTCAATTACCCAGCAAGGCCTGACCAAATAATCTTCACAGATCTTAGCCTAACAATTGAAGCTGGAAAGACAGTAGCTC TTGTGGGACCAAGTGGTTCTGGAAAGTCCACCATTCTTGCACTCATAGAAAGGTTTTATGATCCACAAAGTGGCACAGTGCTAATAGATGGACGTGACAT TAAGAGCTACAACTTGAGAAAGCTGAGATCTTTTATTGGATTGGTGAGCCAGGAACCGACTCTGTTCGCTGGAACAATTCGTGATAACATTGCTTATGGA AATTCCAGTACTGCTACAGAAGCCGAGATCAGAAGGGCTGCAATCCAAGCCAATGCTCATCAGTTCATCAGCACACTAAAAGACGGGTACGATACAAACT GTGGAGAGAGAGGAATGCAGTTGTCAGGAGGACAGAAGCAAAGAATAGCATTGGCGCGAGCCATCCTGAAGAACCCGGCAATCCTGCTTCTGGATGAAGC AACGAGTGCACTGGATAGCATATCGGAGAACCTTGTGCAAGAAGCACTGGAAAAGATGATGGTTGACAGGACATGTGTTGTCGTTGCTCACAGGTTAGCC ACAATACAGAAGGCAGAGACTGTAGCTGTGATCAAGAACGGCAAAATTGCAGAAGAAGGTTCACATAGGAATCTCATTGCCTTGCATGGTATTTACTATT CTTTGGTTAAGGCTCAAGGTGGGAATTCTCCTTACAGGAAAATGGAGAACTAA
AA sequence Show only first row Show all	>Lus10039533 pacid=23165151 polypeptide=Lus10039533 locus=Lus10039533.g ID=Lus10039533.BGIv1.0 annot-version=v1.0 MVGNGKGRLFRHKDPVDMALMLLGTLGSIGDGSMTPLTMYILSSVINDYGGSQLAGSDKTVEKYALRLLFLSFLVGASAFLEGVCWTRTAERQTSRMRIE YLKAVLRQEVGFFDGESATSSTFQVISVISSDAHLIQDTIAEKIPNCLTHLTSFIASIVVSFLLSWQLAISALPFAVLFIAPGLGFGKLLMKLGGKAKEA YEVAGGIGEQAISSIRVVYSYVGEVQTLERFSNALERSLKIGIKQGLTKGLLLGSMGIVYGAWAFQAWVGSYLVTEKGQKGGAVFVAGACIIIGGVSIMN ALPNLSFISQAFLASSRINEMIDRIPSIDSEDDENNNKVLPRVKGDIDFQDVHFSYPSRPDSLVLNGFSLGIHHGETVALVGGSGSGKSTVIALLERFYD PVEGSIFLDGYDIKTLEPIWLRSQMGLVNQEPILFATTIHENILFGNEEATEKHVEKAAMAANIHDFIVKLPNGYQTQVGQFGFQLSGGQKQRIAIARAL IRNPKILLLDEATSALDAESEKVVQSALDKASVGRTTIIVAHRLATVRKADLIVVLQSGNIVESGSHGELIELNNGEDGAYNKMLRLQQSADQRPGEHGQ NRIIMTPHPPQTPVSGSSCEGSPHALSPVFSVNLVTPVQTYIHHQNDRNNKNKSISSSLPPSQWRLLRMNAPEWKRGLLGCIGSAVVGAIQPAHAFCLGS ALSVYFSGDNSYIKSETITYCLLFVSFAVLSFTFNIVQHYNFAIMGEKLVKRVREKMVEKMLTFEIGWFDQEENTSAAICAQIANEAQLVRSLVGDRMSL LIQICFSASIAFIVSLVVTWRLSIVIIVIQPLIIGSFYSRSVLMKKMSEKARSEQREGSQLASEAIINNRTITAFSSQRRILGLFAKTMEGPKKEIVKQS WISGFGMCCSQFLTTASMALTYWYGGKLLIQGLITPKHLFQAFFLLMSTGKNIADAGSMSTDIAKGGDAIRSVFETLDRETEIDPDDPEGKKVRKQVKGK IELDKIFFNYPARPDQIIFTDLSLTIEAGKTVALVGPSGSGKSTILALIERFYDPQSGTVLIDGRDIKSYNLRKLRSFIGLVSQEPTLFAGTIRDNIAYG NSSTATEAEIRRAAIQANAHQFISTLKDGYDTNCGERGMQLSGGQKQRIALARAILKNPAILLLDEATSALDSISENLVQEALEKMMVDRTCVVVAHRLA TIQKAETVAVIKNGKIAEEGSHRNLIALHGIYYSLVKAQGGNSPYRKMEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	6.0	0.8083
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10018993 [exp]	7.3	0.7670
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	8.9	0.7687
					Lus10028090 [exp]	9.8	0.7800
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	13.2	0.7551
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	13.8	0.7140
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	22.1	0.7757
AT2G03630			unknown protein		Lus10004647 [exp]	31.0	0.6374
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	32.9	0.6604
AT3G13950			unknown protein		Lus10029088 [exp]	35.9	0.7508

Compare expression of checked genes

Lus10039533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.