Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 169 / 3e-49 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT5G56060 156 / 5e-47 Domain of unknown function (DUF2431) (.1) AT5G56075 141 / 7e-41 Domain of unknown function (DUF2431) (.1) AT5G25030 129 / 4e-37 Domain of unknown function (DUF2431) (.1) AT4G26485 120 / 1e-33 Domain of unknown function (DUF2431) (.1) AT1G55800 118 / 1e-31 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000235 [exp] 269 / 9e-90 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 269 / 9e-90 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 257 / 6e-85 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 170 / 3e-51 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 165 / 2e-49 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 108 / 8e-28 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 76 / 2e-16 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 44 / 6e-05 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002700 [exp] 180 / 3e-56 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438100 [exp] 172 / 2e-53 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.003G101200 [exp] 176 / 2e-52 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 169 / 3e-52 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 164 / 6e-50 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 160 / 5e-47 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 140 / 4e-40 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 90 / 2e-22 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003133 [exp] 49 / 8e-08 AT1G55800 47 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10039534 pacid=23165253 polypeptide=Lus10039534 locus=Lus10039534.g ID=Lus10039534.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAAAAGGGTTCATTTGGGAAGAAACTCATATCCTACCTACTTGGATGCATATGCTCCAACCCTGAAAAGGAAGAAAGATATTTCCACCAGG AGTTTCAGCTTGCTTCTTCAGCTTCCGCTTCCTCCTGTGATGACTCGGAACTCATTCTCCATGATCTTGATGATGATGATGATCAATCTGAGATATGGAA ATCCCACTACTGCAATACTCATAGGATTCTACTGGTTGGTGAAGGCGACTTCTCTTTCTCTGCTTCTCTCGCCAGAGCTTTTGGATCTGCTTCCAACATT ATCGCCTCTTCTCTTGATTCTCGGGAGTTCTTGAGGAAAAATTACAGGAGATCCATGGCCAACATCGAAGAGCTCATCTCCAGAGGGTGCCTAGTGTTGC ATGGTGTGGACGCAACTAAAATGGCAAGGCTCAAATCTCTCAAGACCATGAAATTCGACCGTATCATTTTCAACTTCCCACATTCAGGCTTCTTCCCTGA TGAATCCTCCCATTCACAGATTTGCCGACACCAAAAGCTGATACAAGAGTTCATGATGAATGCGAAGAAGCTGGTTTCAGAAGACGGGGAAATTCACATA TCCCACAAGACAAATGGGTTCCATCTGAAGTGGGATTTGGAAGGTCTTGGTGAATATGTTGGGCTTCAGCTCATAGAAGAAGTTCCCTTTGATTTCGCTG CTTTTACAGGATATCGAACCAAGTATGGTTTTGGAGGCAACAAGAACTTCAACTCAAAGCCCAGCAGCACTTACAAATTTGGACTTCCGTGA
AA sequence Show only first row Show all	>Lus10039534 pacid=23165253 polypeptide=Lus10039534 locus=Lus10039534.g ID=Lus10039534.BGIv1.0 annot-version=v1.0 MKKKKGSFGKKLISYLLGCICSNPEKEERYFHQEFQLASSASASSCDDSELILHDLDDDDDQSEIWKSHYCNTHRILLVGEGDFSFSASLARAFGSASNI IASSLDSREFLRKNYRRSMANIEELISRGCLVLHGVDATKMARLKSLKTMKFDRIIFNFPHSGFFPDESSHSQICRHQKLIQEFMMNAKKLVSEDGEIHI SHKTNGFHLKWDLEGLGEYVGLQLIEEVPFDFAAFTGYRTKYGFGGNKNFNSKPSSTYKFGLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	0	1
					Lus10038232 [exp]	6.4	0.9194
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	8.5	0.8935
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	8.5	0.9162
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	9.3	0.8882
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	10.1	0.9170
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	11.1	0.9136
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	14.0	0.8802
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	14.5	0.9116
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	14.7	0.9121
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	14.7	0.9096

Compare expression of checked genes

Lus10039534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.