Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 105 / 6e-25 ND / Lus10007415 [exp] 102 / 9e-24 ND / Lus10039353 [exp] 98 / 4e-22 ND / Lus10006886 [exp] 86 / 2e-18 ND / Lus10017800 [exp] 80 / 3e-18 ND / Lus10042979 [exp] 83 / 6e-17 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10029758 [exp] 81 / 3e-16 ND / Lus10026445 [exp] 77 / 3e-15 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10023004 [exp] 74 / 6e-15 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039535 pacid=23165337 polypeptide=Lus10039535 locus=Lus10039535.g ID=Lus10039535.BGIv1.0 annot-version=v1.0 ATGGGCTCTTACCCTTTTCTGACAGAATTTGTTGGGAAGCTCATCAAGGCTGATCATGTGAACCATATCAAAGCTAGGCCAAGTGTAGCTCCGGTCGAAA CTCTTACGGTCGTCGATGACAGCCTTATTGATCCTGACACGGTTGTTTTGGATGACATGACTCTGCCTATTGTTATTGTTTTTACTGGATTCAACATTGG TACATTTCGCGATCGCATAACTGCCTTCAGCAACACCACGAGTCGGGTCATTCAGAATCCTTACCATCTTGCTGCTGATGCCTCGCTCATAGTGAAACAC GTTATCGGTGCTCTGCAGCTATTGTTGGGGTTGATTGCCATCAGCACTAGATTTACACTGCTTGCTCGCATTGTTCTTCCGCAATCACGACCAATGGTGC ATACTTCTGGTGCCAAACACTTTCCCAAGTTTCACAAACCCTCCCTTCCTTACATTAAATTCCATCTGCCTCTTCATTTCTATTTCACATGTTCAACAAA ACTCCAACTCCATGTTCTTATATTTCGAACTCCATTTCTGCTCCTCAGTTTAGGTTCCGTTTGTTATTCTGTGGTTGCTTATCTCCATGGTCACATCCTT TCAATGTATGATCCAAAAAATACTCCGCCAGAATTGCAAGACTACAAACTCGATATCTCTGACTTACAATGGGGTAGGAATGAAGAGTTATGGTTGCTGC GTTTAATACGCTGGTGGCGCGCGCCTGCTGATGCCTCACCAGACTCGCCTCCCTCTATTTATACCCAATGGATTGACATCCATGAACCAATTTGGTGTTC AATCCAAATTATTGAGGTCCAACATCGTGCGGATAGCATCGTTTATTCTGAAGGCAACTCCAGCTACTGTGTCATCACCCGTTGTGCGAATGCCACTGCC ATAACCAATTTCCTTTTCATTGGACCAGCAGCTAACATGCTCCTGAAATTGACACCACGCCAATATGCGTATTTATCAGATGCCCTTCAGAAAAACCTTT TGCATGGTCTTCGAGGCCGGTCTTTTATCATTGAGACTCAATCGCTTGGGCCGAATTCCTCTGGCCGTGCTCATTTTGTTGTCACAAATCTCTAG
AA sequence Show only first row Show all	>Lus10039535 pacid=23165337 polypeptide=Lus10039535 locus=Lus10039535.g ID=Lus10039535.BGIv1.0 annot-version=v1.0 MGSYPFLTEFVGKLIKADHVNHIKARPSVAPVETLTVVDDSLIDPDTVVLDDMTLPIVIVFTGFNIGTFRDRITAFSNTTSRVIQNPYHLAADASLIVKH VIGALQLLLGLIAISTRFTLLARIVLPQSRPMVHTSGAKHFPKFHKPSLPYIKFHLPLHFYFTCSTKLQLHVLIFRTPFLLLSLGSVCYSVVAYLHGHIL SMYDPKNTPPELQDYKLDISDLQWGRNEELWLLRLIRWWRAPADASPDSPPSIYTQWIDIHEPIWCSIQIIEVQHRADSIVYSEGNSSYCVITRCANATA ITNFLFIGPAANMLLKLTPRQYAYLSDALQKNLLHGLRGRSFIIETQSLGPNSSGRAHFVVTNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039535 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	4.2	0.7223
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	5.5	0.6998
AT4G24840			unknown protein		Lus10024203 [exp]	5.7	0.7219
AT1G78690			Phospholipid/glycerol acyltran...		Lus10003105 [exp]	10.0	0.6069
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	11.7	0.6992
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	13.3	0.6671
AT5G55380			MBOAT (membrane bound O-acyl t...		Lus10003655 [exp]	15.0	0.5836
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10037312 [exp]	17.9	0.6451
					Lus10019563 [exp]	19.3	0.6441
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	28.5	0.6457

Compare expression of checked genes

Lus10039535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.