Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59560 295 / 2e-100 SRR1 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024163 [exp] 534 / 0 AT5G59560 295 / 9e-101 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198000 [exp] 339 / 4e-118 AT5G59560 320 / 2e-110 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Potri.T125306 [exp] 337 / 6e-117 AT5G59560 315 / 2e-108 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Potri.001G026700 [exp] 327 / 4e-113 AT5G59560 317 / 3e-109 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07985 [flax] [poplar] SRR1 SRR1
Representative CDS sequence Show only first row Show all	>Lus10039536 pacid=23165294 polypeptide=Lus10039536 locus=Lus10039536.g ID=Lus10039536.BGIv1.0 annot-version=v1.0 ATGGCTTCATCTGCCGAAGTTCTTTCCCCTGACAAGAGTGTTCTGAACGATGGATGGACAATAGTGTTGCCTCGTAGCAACAGACGCAGTAGAAAGTTAC CTAAACTTAAACCTCTGGAGGAACAAGGAAGATCATGGATTCCAGCTGATACGAAATCCGGTGTAGAGAGACAATCAAAGTTGATGCAGAAGATGGTTGT CTGTATGAAGAGAGTAGAGAAGTCTGCCTTCGGTCAGAAGTTTTTGGAACAAATGCAAAGCCAAGAAATAACTGATCATTTCCATAAGGTTCTGGGTTCG GAACCGAAGATGCAGATGGTGATATATGGCATTGGCAGCATAGAATCACACGAAACCCCTCGACTTCAACTCAGCATTGCCCTCCTGATGAAGACCAAGT TCAGTTGGATTGGGGACGTACAAGTGTTCGATCCAGTCCTTTCAGCTACAGAGTGCAGAGTTCTGGAAGTCCTTGGCTGCTCCGTTCTATCTATAAACGA ACAAGGTGAACGAAGAGCAGCAAAGCCGACGCTGTTTTATATGCCGCATTGTGAAGCAGGGCTTTATAATAACCTTCTAAGGGCGAACTGGGAAGTGGAG GCATTGAATAGAGTGGCATTGTTTGGTAACAGCTTCCGGGTTTATCGAGAGTATGCTTTGTTGAAGAACCTGGTAGTGGTGGATTCAAGCCACATTATAG CTGTTGAAGGCGTGACAGAGGAGTTTGGAGTGAGCACTGTGTTGGAAGATTATTTTGCAGGTTTTCATGACTCGAGCTGGCATTTTTTCAGGCCGGGTGG AGATGAAGACCTTCCATTGTTAGATAAGAAGTAA
AA sequence Show only first row Show all	>Lus10039536 pacid=23165294 polypeptide=Lus10039536 locus=Lus10039536.g ID=Lus10039536.BGIv1.0 annot-version=v1.0 MASSAEVLSPDKSVLNDGWTIVLPRSNRRSRKLPKLKPLEEQGRSWIPADTKSGVERQSKLMQKMVVCMKRVEKSAFGQKFLEQMQSQEITDHFHKVLGS EPKMQMVIYGIGSIESHETPRLQLSIALLMKTKFSWIGDVQVFDPVLSATECRVLEVLGCSVLSINEQGERRAAKPTLFYMPHCEAGLYNNLLRANWEVE ALNRVALFGNSFRVYREYALLKNLVVVDSSHIIAVEGVTEEFGVSTVLEDYFAGFHDSSWHFFRPGGDEDLPLLDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10039536 [exp]	0	1
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	3.3	0.8804
AT3G02710			ARM repeat superfamily protein...		Lus10026721 [exp]	8.1	0.8713
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	25.8	0.8660
					Lus10003137 [exp]	36.3	0.8431
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	40.2	0.8686
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	45.8	0.8193
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	49.0	0.8346
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	53.7	0.8613
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	59.9	0.8586
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	63.0	0.8465

Compare expression of checked genes

Lus10039536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.