Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13810 254 / 2e-84 Glutaredoxin family protein (.1) AT3G57070 198 / 1e-60 Glutaredoxin family protein (.1) AT2G41330 182 / 1e-54 Glutaredoxin family protein (.1) AT5G58530 150 / 5e-44 Glutaredoxin family protein (.1) AT5G39865 145 / 8e-41 Glutaredoxin family protein (.1) AT3G28850 134 / 4e-36 Glutaredoxin family protein (.1) AT5G06470 126 / 7e-35 Glutaredoxin family protein (.1) AT4G10630 124 / 4e-33 Glutaredoxin family protein (.1) AT1G64500 123 / 2e-32 Glutaredoxin family protein (.1) AT1G32760 120 / 6e-32 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024164 [exp] 504 / 0 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10018025 [exp] 160 / 1e-46 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10001669 [exp] 157 / 6e-46 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10040949 [exp] 144 / 5e-42 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10042021 [exp] 147 / 1e-41 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1) Lus10007517 [exp] 143 / 3e-41 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10013597 [exp] 140 / 2e-40 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10017029 [exp] 145 / 3e-40 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021255 [exp] 139 / 5e-40 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198100 [exp] 328 / 1e-113 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 328 / 1e-113 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 325 / 3e-112 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 220 / 4e-69 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 211 / 1e-65 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 155 / 4e-46 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 151 / 2e-44 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 149 / 7e-42 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 143 / 2e-41 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 146 / 6e-41 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10039537 pacid=23165359 polypeptide=Lus10039537 locus=Lus10039537.g ID=Lus10039537.BGIv1.0 annot-version=v1.0 ATGGCGGAATTCGAGAAAAACGCCACCGCCACAAACAACAATAACATGGATTTATCTGTGAAAACGAGAGCTAGTCCGACTTCCTCCGCCACCGCTTTTT TCCACCGATCTTTCACAATTCAGGCAGCCAGAGCAACCCCTAAGCCATACATCCAATCCCCATCCCGATTCACCAATTCCTTCGACTCCATGAAGGGCAA AGTCAGAAAAATCCGCAACATCTTCGAAGCATCCCGATCCCGCCCCAAATCCATCTCCGACGAATCATCATCGAAGCAGAAATCGTTAATGTCCACAACA TCATCATCGTCGTCGTCGCAGCTTCCTCCTCCGGGGAAGTATCTGTCGATGAAATCAATGGCCCCCGACCACAGTCGGTACCACAGCCTATTCAAAAGCA GTTGGGTGGTGCGATTGGCAGGTACGGAGGACAGAATTGTGGTGTATTTCACAAGCTTGAGAGGTGTGAGGAGGACGTTTGAGGATTGCTATGCTGTTAG GATGATCTTTAGAGGGTTTAGGGTTTGGGTGGATGAGAGGGATATCTCGATGGATTCGGCTTACAAGCAGGAACTGCAGAGCGTGTTGGGGGCTGTGACG GTGCCGCAAGTGTTCATAAGAGGGAGGCATGCCGGTGGAGCTGAGGTGATAAAGCAGATGTTCGAGACAGGGGAGTTGGCCAAAGTTCTTGATGGTTTCC CAAGAAGGGAGCCTGGTTTTGTTTGCCAGGGTTGTGGGGATGCCAGGTTTGTGCCTTGTTGCTTCTGTAGTGGCAGTAGGAAGATCTTCGACGAAGACGA AGAGTTGCCCAAAAGGTGCTTGGAATGCAATGAGAATGGCTTGATGAGGTGCCAGGATTGCTGCTCGTAA
AA sequence Show only first row Show all	>Lus10039537 pacid=23165359 polypeptide=Lus10039537 locus=Lus10039537.g ID=Lus10039537.BGIv1.0 annot-version=v1.0 MAEFEKNATATNNNNMDLSVKTRASPTSSATAFFHRSFTIQAARATPKPYIQSPSRFTNSFDSMKGKVRKIRNIFEASRSRPKSISDESSSKQKSLMSTT SSSSSSQLPPPGKYLSMKSMAPDHSRYHSLFKSSWVVRLAGTEDRIVVYFTSLRGVRRTFEDCYAVRMIFRGFRVWVDERDISMDSAYKQELQSVLGAVT VPQVFIRGRHAGGAEVIKQMFETGELAKVLDGFPRREPGFVCQGCGDARFVPCCFCSGSRKIFDEDEELPKRCLECNENGLMRCQDCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	0	1
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	1.0	0.9409
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	2.0	0.9289
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	2.4	0.8860
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	4.9	0.8536
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	4.9	0.8736
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	6.7	0.8798
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	7.5	0.8506
AT4G28270		ATRMA2	RING membrane-anchor 2 (.1)		Lus10031641 [exp]	7.7	0.8850
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	7.7	0.8631
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	7.9	0.8731

Compare expression of checked genes

Lus10039537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.