Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 383 / 3e-128 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 381 / 2e-126 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G25980 378 / 9e-126 BGLU37, TGG2 BETA GLUCOSIDASE 37, glucoside glucohydrolase 2 (.1.2.3) AT5G24550 377 / 1e-125 BGLU32 beta glucosidase 32 (.1) AT5G24540 371 / 3e-123 BGLU31 beta glucosidase 31 (.1) AT2G44460 371 / 8e-123 BGLU28 beta glucosidase 28 (.1) AT3G60120 370 / 1e-122 BGLU27 beta glucosidase 27 (.1) AT3G09260 363 / 3e-120 LEB, BGLU23, PSR3.1, PYK10 LONG ER BODY, Glycosyl hydrolase superfamily protein (.1) AT1G26560 360 / 2e-119 BGLU40 beta glucosidase 40 (.1) AT2G44470 362 / 7e-119 BGLU29 beta glucosidase 29 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030577 [exp] 757 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10039513 [exp] 753 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10024152 [exp] 753 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012869 [exp] 727 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030516 [exp] 725 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10030518 [exp] 715 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10030911 [exp] 707 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10012871 [exp] 679 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012868 [exp] 637 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 442 / 4e-151 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 431 / 5e-147 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 425 / 2e-144 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 425 / 3e-144 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G222904 [exp] 423 / 1e-143 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 422 / 1e-143 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 422 / 2e-143 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 420 / 1e-142 AT5G42260 525 / 0.0 beta glucosidase 12 (.1) Potri.004G110691 [exp] 420 / 1e-142 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2) Potri.004G110620 [exp] 420 / 1e-142 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10039541 pacid=23165056 polypeptide=Lus10039541 locus=Lus10039541.g ID=Lus10039541.BGIv1.0 annot-version=v1.0 ATGGGTTTGGCGACTGTAGTAATGATGTTTGTAATGTTAAAGCTCCTGCTCATCGCTGCTGGTGGCTCTGAGTTAGGCGCTCCGATCACAACCGACCCCT GCTTAGACTCTGACTACGTATACGAGCCCTCGAAAGAGCTTCCCAATGGCCGTTTCGATTTCCCTGATGGCTTTGTCTTTGGTACTGCCACTTCTTCCTA TCAGAGAGATGTCGCAAGGATGAAGTTTCTAAACATAGATGCTTATAGATTCTCTATTTCATGGCCTCGCATTATACCAACTGGCAGGCGAAGTGATGGA ATCAATCAAAATGGCGTCAACTTTTACCACAGGCTCCTTGATTTACTTATTAAAAATGGAATCGAGCCTTTTGTCACAATATGGCATTGGGATACCCCTC AAGGTCTCGAAGCCGAGTATGGTGGTTTTATAAGCCGTAACATTGTTAAGGACTTTGAGGACTACTGTGACTTTTTATTTCAAGAATATGGTTCGAAAGT GAAAAAATGGATAACCCTAAATGAGCCTATGGGTAACTCGTTGAAATCCTATGATGAAGGAGTTTTCGCACCAGGACGTTGTTCTGTATGGGTTAATAAA AAATGCCAGCAAGGAGATTCTGCAACTGAACCATACATTGTTACTCATAATCTTCTTCTAGCTCATTCCGCTGCTTACCATTTGTACAAAAACAAATATC AGAATCTTACAGGGGAAGTAGGAGTAACCTATGTGACACATTGGTTTGTTCCTTATTCTAATTCAAGTGAAGATGTTGCCGCTGCTAAAAGAGCTCTGGA TTGGATGTATGGTTGGTATATGGAGCCAATCACATCTGGTAGCTATCCTTATACCATGAAAATGTTACTGGGATCCCGTTTACCAAACTTCACAGATGAT GAGTCACGCTTGCTTAAGAAGTCATATGATTTTCTGGGTCTCAACTATTACACGGGTTACTTTGTCAAATTCAACAATAATTTTGATCCAGTTAATCTCA GATATGCAACTGATTCATACGGCATTACCTCACCCGACAGAAATGGAGCCTTCATTGGACCACATTTGGGTTCATACTGGCAATATCTATATCCAGAAGG TTTACTAGAATTATTGAAGTATACTAAAGCAAACTATAATGATCCTGTTATTTACATTACCGAGAATGGAATGTCGAAGAAGGACAACACTACCAAAACG CTTGCAGAGGCCTTAAAGGATGAGGGCAGGATTAATTTCTACAACCTGCATCTTGCATATGTTCTGCAAGCCATGAAGGAGGAGCAGGTGAAAGTAAAAG GGTTCTTTACATGGTCTTATGCTGATAACTTCGAATGGAACGAGGGGTACACGGTTAGATTTGGACTCTACTACATTAACTACACTGATCGATCAAGACA TCCAAAGGATACAGCTTGTTGGTACACAAATTTCTGCAGGAAGACCCAACCCAAGTCTTTCAAGTACTTTGATCTTGATCATCAGATCAACGCAACAGGC GCTGATAGTCGTGCTGTTGTTTGA
AA sequence Show only first row Show all	>Lus10039541 pacid=23165056 polypeptide=Lus10039541 locus=Lus10039541.g ID=Lus10039541.BGIv1.0 annot-version=v1.0 MGLATVVMMFVMLKLLLIAAGGSELGAPITTDPCLDSDYVYEPSKELPNGRFDFPDGFVFGTATSSYQRDVARMKFLNIDAYRFSISWPRIIPTGRRSDG INQNGVNFYHRLLDLLIKNGIEPFVTIWHWDTPQGLEAEYGGFISRNIVKDFEDYCDFLFQEYGSKVKKWITLNEPMGNSLKSYDEGVFAPGRCSVWVNK KCQQGDSATEPYIVTHNLLLAHSAAYHLYKNKYQNLTGEVGVTYVTHWFVPYSNSSEDVAAAKRALDWMYGWYMEPITSGSYPYTMKMLLGSRLPNFTDD ESRLLKKSYDFLGLNYYTGYFVKFNNNFDPVNLRYATDSYGITSPDRNGAFIGPHLGSYWQYLYPEGLLELLKYTKANYNDPVIYITENGMSKKDNTTKT LAEALKDEGRINFYNLHLAYVLQAMKEEQVKVKGFFTWSYADNFEWNEGYTVRFGLYYINYTDRSRHPKDTACWYTNFCRKTQPKSFKYFDLDHQINATG ADSRAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	0	1
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	1.4	0.9966
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	2.0	0.9945
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	2.4	0.9835
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	4.0	0.9733
					Lus10007415 [exp]	4.5	0.9781
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	4.9	0.9789
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	7.7	0.9738
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	10.0	0.9670
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	10.2	0.9733
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	10.4	0.9460

Compare expression of checked genes

Lus10039541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.